RnoINT0138500 @ rn6
Intron Retention
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20504368-20512706:-
Coord C1 exon
chr14:20512545-20512706
Coord A exon
chr14:20504547-20512544
Coord C2 exon
chr14:20504368-20504546
Length
7998 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TCTGGGACTTCTCTCTGCAGAAG
3' ss Score
8.88
Exon sequences
Seq C1 exon
CCAACAAGCCCTCACCGGGGTTGGTTTGTCCCACCCTTTGGAGGAAACCCCTGGTGGGTGTGCCTTGCTGCTGCTATCCCGGCTTTGCTAGTCACCATCCTGATTTTCATGGACCAGCAAATCACGGCCGTGATTGTGAACAGGAAAGAACATAAGCTCAAG
Seq A exon
GTAGGTGCCCATGAACACGCTTGTCCTTGCCTCCTGCAGGCTTCTTCATTCTTGATAGCGCCTGTTAATTCAAAAGCAAGTGAGCCTTACTGAGTTACACTCTAATGCAAAGTCATCCATGTGTCCCATAAGGTCCTCAGGGTAACATCTCAGGATGCATTCTCTTAAATGTGAGGAAACACTTTCACCTTGCGTTTGTATCCAGAAATGGGTGTAGCAGTCTTCCTACTCTGAATTTGAATGTGACAATCATCCTTCATGAAGACATGGTGACCCAAGATTTAATGAAAGCACCTATTCTCTGTTAAATAGGCTCTGATTTTTTCCTTTTTAGATAGTTTTAAAGGGCTGGGAAGTGGGTAGCAAGGTGATGATGGAGTGTGTATCTACATCACAAGCTCCTGATTCCACTCCTGCTACACAAAAGTGGATTGCATCTGTTTACAAGGTTAATGTGACACTTGCGTGTGTACAGCATATAATGGCCGGCTCAGGTCAGAGTCATGGCCATTTCCACATCTTTAATCCCATCAGTTCTTAGTGCCTGGAATGAGTAAAGATTTATTATTAAAGACTACTCACCTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCCTCAGTGTACTTATATAATAAATCAATAAATTTTTTAAAAACTTTTTAAAAAAAAAAGACTATTCACCAGTTGCAAGATGGTGTATTTGTAAGCATCGCTCCACCTCCCATTTCCTTAAAATATTTGTCTCAGGAGAGTACATATCAAAGTATGGAGAAATGGCTTTATTTTTATATTTTAGGTTTTGGAAACATTCGTTTAGTGCCATTGTGATGAACCCAAAGAAAATGGTTTAGTGGTGGGGGGTATCTTTCAAGAGACTACCTATATGGTTAGTACATTATATACATTTTCTCCTTGTCTAGTGATATTTTAAGTTTAAGTCATAAATGACTTCAAAAATGTCATGTAGGGGCTAAGCAGTGAATAATAACAATAAAGGAGCTAAGACTTTATGGCCACTCATCAGGCATTTGATAAGCACTTTATATCACATATCAACTCACACTCACCATGCATCAGGTCGTTTAATAAGCACTCTATATCACGTATCAACTCATCTTTTCATGATCACCGTATAAGAGAAGCACGGAAATCTATTGAGATGACACCTAGAACCAGGAAAGTGCAATGCCCAAAAAGTATTCAGCAAAGGCATGGCCGAAGGAAGAGTGCAGGGAAAGTCACACATTTGACTGTAGAAACATACCAGGCAGATGCAGACGAGAGATGATAAACCATCCCGTTAGAACTGTGGGGCAGGGTGAGGAAGAAGTAAATCTCATAACTCCTAAAACTAGGAAAAGAAGAAAACCAAAGCTTTCATTGAAGCGATGGTTCAGTTTTGAAGGTTTTTGGAAAAAGACGGAAGTCATGACCTGTGCACACACAGTACGTGGCTCGTTCCTAAAGTTGCTGGGAAGGTAGGGTAAGGTATAGAGGGTGTTGAGAGCCTCTGCATGGTTGTTCACTTCGTTGGCATAGAGGGTGGTCAGGAGGAAAACGTCCTGGACAGTTGATGAAATCCTATTGGGGGGGGGTCACTGGATGCAGTGATTTTCCAGCAGATTCAGTGATGCGGGGAGATAGAATGCGGACAGGCTTATATTTCAGTAGATGGGAAGTTATGGAAGCCTGAGATTTATTGTGGAAGCAGGGACAGCTGATCCCGGGGGAGTGTTAGCAAGCCAATTTACCCTTGCTGGGTGAGTTTAGGCAAGCATTAGGCTCTGTCTCAAAACAAACAAGGGGGGCACAATCACACATGAGGTTGCTCGCTCTGGCTTTCATGGGCATCCTTACACACGTAAGGTGTACAATACATTCACACACCACATTAAAAACAGAACCAGGAGGGGCATATGATCCATCCATTTCTCTCTCTGTCCATTCATCCCTCAACAAATAATACATACATATATACCTGTGAGGGAGGAATGGTGTGGGGCAAAGAACAGAGGCACAGCCACTTTAATCTCTGTTTTTAGCTTGGGCTTTTCCAAGCCACATAGGTAATGTGAATTCCACTCACAAAGCCAATTACAGGGTTGTCTTAAGAACGTCCTCCCAGACTCTTTTTCATCTGGCATCGTACTCATTGGCAAGACTAAAAGAGACGAGGCTCCCCGTTGGCTCCGTTTAGGAAGAGTTTGAGTGTTGGTCTAGTTTACGGAAAGGCTAAACATAGATTTTTGACTAATGCATTTTTTAATCTGAAAATATTGAATTTCAATCTGTTGCTGGCAAAGATTTGCTGTGTACTCTTGGAGGCAAGTTTCTATTTTATTAATGCCCCTCAAATTTTCTTACTGATAATTTCCAAATTCAGAATTAAATACATTTAGGGTTGATAAAATAGAAAAGCATTTTCTTTCCCCTGTGTCTTTAGGAAACATTAGAAAATTGAGAGTGTTAGTCTTCGCCCTGAACATGAGAGATGGGTGTGCAAAAAGTGAGCTCCTGTCCCCTTTCAACTCGTTTATTTGAAACTATTCCTTTTCATGAGGATGGTAGCATGCCAGTCATTTGTCACAAATATAATCCTACCAACAGGCATCTCTTCATGCATCAAAGACTCTCCAAATTGCTTTGTTCTCATTTTGCTAAGGAGAGCTGTGTAATATATAAGTGCATGATTCGAAATGCTATGTGCTTGAGTCAAAAGTGATTGATTCAAAAGGGAGATGGAGATACCACAGTGTTGAAAGCAGCATACTTGGGGTGGCTTTTGCTCTGACAAAGTGTCAAGTGGCTCTGGCTATCTGCTCTGCTACCTTTCCGTCTTGCCGAATAACCCCACAATGGTATAGCAGCACCAAGACTCTTGGCTTGATGGGGCCATCTTTGTTAGCTATGTCCTTCGTCCTACCTGCACAGTACTCAAAAGCAAAGCAGGTCCATCAAGGTCAAGTACTTCTCCAAGGTCATTTCCTGAGTCACTGTCAGCAGCCTGAGCAGAGCCAGCTTCAGACCGCAAAGCCAGAGGTGTTCCTTCCAAAGCAGTGACTTCAAGAGTCAAGTGTAGGAGGCAGACATCGTTCAAGACAGATACATAGAGACAGATATCAGACAGTCCTCACGACCATTTCCCTACGACATACCTTGGGATGAAACGTTGAATTTAAATATATTTTCACTGTTTATTTTTCATTGAAAAAAATAACTCGTGATCTCCACCTTGCTCTGTACTTTTCATTTCTGCCTCTATTATCATAATCTTGGATCTAGTGCTTTTATCTCAAGCTAGATTTTTGTAATAGTTTAGCCAGTCAAGCATAATAACCAGCTTCCCTCGCTTCACTTCAACTGCGTACATTTTTGTTTTTAAGGCGTCCTTCTTCTACCTTGGTCCTATGTCTGAAGCACCTTGACCATCTAAACATTTGCAGCCTAACAGTCTGTTTCTCCCACCTTGGCATTTCAAGAACCCTGTGAAGGAACCCAAGCAGGATTTAAAACACTTGGTCTCGAAGTGCCAGGAAGTGCTCTGCTTAAATGGCCTTTTTGTTTCTTACTTCTCACAGTTCTGCTGGGGCTGGGGCTGGGAAGATCCACTCCTCCTCAGTAGTTGCTGTTCACCAAAAGACTTTAAGTGTTTCTAAATATAACACCCCGTGTCACCTGCCTTCACCCCTAATGTAATTTTTATTGCCCTTGCTTTTGTTTTTTTTTTCCTAGTGATTTATCTTATTCTGTGCTATTGGTCACATGATAGCTCCTACCGTGCTTTGCGTAATGACTTCACCCCTATTTCTCAGCCAAAATGTTTTTAAAGTAAACCCCATGGTTTATTCTTCTTTCCAGATTTTATGTGGCCTACCCCAATCCATGGTAGCCCTGATAAATTTGTAACTGAAATGCTTCACTATGTGGGGCACATAGCTCTTGGGTTTATGATACTGTGTGAGAGATGATTGCTGAAGAATGTGCTAACCCGTCCCCACTCCCCCACCCATGGCTGTTTACGGGGATTAAAGCCATATTTAGATGATACTCACTCAAATGCTTCATCCTCTGCGATTTTAGTATCTTTTCTAAACTCATGTGAATTTCTGTTTAGAGCCCAGTTTAATTTTCACATGGATCTGAGCCCTCTCATCCAATGGAGACCTTTTGGAGGCGTGTCTTTAGCGACTCAAGTCCTGGAGGCTCAGAGCATGTGTGATGAATGTTTACACGATGTCTGTGTATTGTTCCCAACTCTTCCTTTCTTGTCATCTGTGTACTGGATATAAACATGAGGCTTCTCTTGCATGTTTTGATTTTTGTGGACTTACTCCTAGATTACTTTTGTTCTGTGTTAGGAAGGGATGTGCTGTTTCAAAGAGACAGCTTCCGTTTTTGTGCTTAAAACACTTGGCAGTTTCAGAAGATAGGAGATCTTTTGGGTCCTGAAGTCAAGGACAGTTTCAGATTGCTTTTAAGATACTGAACATCTGTGTTGGATGCTGAAGGGAAAACTGTTTCAATATCTTTCTCTTCCCCATCTTACTTTATTTGAGCTGACCCATCTTACTTAGTGCCTGGTATCCTGCATATATTTTAGGTCACCTGTTTACCTCCTCAACTTCAGCTAGTCAACTGCACCACTGTAAGAATGGGTGCTTGTCTTAGTTTAATCAAATACAGGACTTAGTACAGAATAAATCTTCAATAAATGTTTATTCAATAAAAATTTGCCACACAAAGGCCCCAGAGTGAGAAGGAACCGGCTGTATCAAGAAGCAGAGAGAAGGCCAGGGGGACAAGTGAGTCAAGTTGAGGTCACAGGAAGTAGTAAGCTCAGGTCACACAACACAAGGTTTGTTAGCTTTAGCATTTGTACTGGTTTGAACAATCCTGTCCTCCTGTTGGTGGTGGCTGTCCTATGTACTTGCAGCCACTTGTTGGCATGTCTGGTCTCTGTCCAGGGCTGCCAGTTGCACCATTTCTCCCAAGTTATGATACCTAAGACTATCTCCAGCCACTATTATAAGTTGGCCAGGGTGAGGGGTGGCCAACAGTTATAGGAATAAACGTTCATGTATATCCTTAGAGGTGACTTTATACTGTTTAGTTTTCACTACTACTGTATTATAAGTAAAAACCAGATGCCATTGAAAGGTTTGGATCAGGGAAGTGTCACATATTAATTAAGATGTTTAAAGATTAGTCTGTGAAGAAAGTCAGTTCTCAAGAGCAAGAGTAACACAGGGGCTCCTGTGCTGGCAGTGGCATGAAGGACTAAAGAGTGCTGGTCCTTGTGAAGGAAAAGTAGGGGAGAGGATGGACTCGAAGATATTTTAAGTTGAAGAGTTGCATTTGTTGCCCTCCCACTGGCAACAGTTAAGTGGGGATGAACTGAATGGAACGAGATTGCCGTAGAATCCAAGAGTCTAGAAAAGTCAGAAGCAATGAGGAGGGAGAAGAGAGGATAACTTATGCTATCATGAATATTTCTGTTTTCTGTCCTCTCACAGGTTTTAGATAAGGATGCCATTATTCACACTTCATTTTATTTCCATTCAAACAGTCATTTAGATACGTCTGGCTGGGGCATGCCTCTAGGAGAGCTTGCTTTCATGCATATCATAGCTGATTTGTAGGAACGGCTTCCCTAAGGTAACTGTTGGCTTCCATAGAGTTTATAGCAGTATCTTGGGGCAAAGCTTTTCACACTCCTTCCAATATTCTATCCTTAAAGCTTAGTGTATAGCACAATGGCCTGGACATACTAACCTTTGCACGTTAGCCAGTCTTGCACGTTGACATTTGGCAAAATGAATTAATCGGACTTTTACCATCTCTAGGCTCAGTGTTTATAATCCACCAGGAAAAAGGAAAGGCAATTTCTGTCTTCAATAAGTAAGACTGAGCCAAGGAGAAGAGTGGGTAGTGCTAGTATGAGAAGAGACAGAAAGACATTAGTGAGGGAAATACATTGAAGGATCTCATGTGGCTGAGTGTGGCACTAGACAGAACTCAAGGCGGGAGAAACAGAAAAGAGAGGCTTTGACCACCGTCCCTTCTCCCAATGGCCAGATCCTGAATGGCCCTGCAGCAGCATCATAGACATATACACTGGTAGGAGAGGACAATTCTCAGTTTACAATTCTCAGGTTACAGTTAGAATCTAACCACCTCTGCCTTCATAACCATGATCTCTTAAACCGACTGCCCCACCTGCCTCCTACCTGCTCCTGCTGTCCTTGACTCTAATCATACCATAGTAGCCACAGTACTTAGAATACAGCCATCAGATCACTCTGCTCCTGAAAGTCCCCCAGCGGTTCTCCATCTTACTCCCAAAGCAAACCTAAATTGTTCTGTTTCCTCTTGGGGCTTACTACCAGATAAGATGCTATATACTTTCAAAATATATGTTTGTTCCTTACTGTCTCTCACAGTAGGAGGGAGAACAGGAGGCTTTTTGTTTATTCACAAAAGGGTCAGAGGCAGCTAAAATCCTGGCTGGTACTAAGATGTAAGTTACTGATTTGTTGAGAGAAACATATGATTGAGATCCCACACCTATCATGATATTTACTTCTTTGGTTGATATAGAATAAGTTTGTATCAGCTTACCCCACATTTACCTCGTCCCACCGTATTTCACTTCTAATTCCTATAATTATGCATTCCTAAAGTGAACTAATTACATACATGTATGATAATATTTGTCTCGAGAGCAGCCGTCTCTTCCCAGTCAAACCTAGCTTTATGAGACCATGTCTTTGCTTCCATGTCGGCCCCCATGCCTGCTATGCAGTCTCTGAGAATATGGATCTGTGTGCAAGCCATGGATAAAATCTTGGCAACTCTGTGAGAGGAGAGTGGTGTTCTGACAAACTGTAACAGGATTCGAATGATAACATTCCCCGGGTTGCTGGTGTAAATCACACCGTGACTTTCCAAAGCCAGTCTCCCGATTCTCTTGGATCAGCCCTAGTCTGACTCTTGGTACTGTTCCCTCATGCTGTGAGAATGGACAGCTCTAGTTTCCCCAGCTCCACAGGGGTACGAGCCTTTGATTTCTTCATAAACAGAGCAGAGAAATATAACCACAGGAAAGCACCAGGGACATGATGAACAGTATTTACTTAGTGAGTAAAGAAGCTAGAACTTTCGTTGCACCGTCTGCCCATCCAGTCAGTAGATGTTATTGTGAGCATAGGGTGGTGTTTGAAATCCATCTGTTTTGATTAAGGGAGTACTCTTTGCCTTAATGATGGTGAACAATGGGTGGTTAAACAACTGTTCTCACAGGCCTTGAGAAGTGAGGGACGTCCATTTACATATATCTCAGGGTTGTTTGGGGGATCCTTACATACGCCTAGAACAGTCATGATGAGTAGCATTCTGTTAAATACTGTCACAAGAGAAGACGGAGGGTGCTTTGTAAGTGTTGGTCATTCTGCCTTAACAACCACTACCACCCCGACTATTGCCTCCTTACTGAGCACTTCTGACGTAATAGCTACACCCCTGTATGAAGTTACAAGGTCCTTTGTTGCGATTCTCCAAACAAGGTCCCTACCTTCACTTTTGGGGTTACAAAATTCAAGGCAGAAAGGTTGACTTATAATGAATAGGTACTAAGAGTAGTAAACATAGGTCTGAATTAATTATTCAGAATTGTAATAGAGTAGGATCTGCATAGGTGCCGGAGGAGAAGGTGAACACCAGGAGTGTATTCCAAGGAAAGGAATGCCCAGTCTCAAAGTGCTTCCTTATAAGAGATACTATGAGAGGTACTTTTACCAAGCAGAACAAGTTTCATTTGTCCATCATGTTTCCCATGCCTAACTGTAGCAAGATGACAAGTACGAGTGCTTTCTGGGACTTCTCTCTGCAG
Seq C2 exon
AAGGGAGCTGGCTATCACCTGGACCTGTTTTGGGTCGCCATCCTCATGGTGGTGTGCTCCTTCATGGCTCTTCCCTGGTATGTGGCTGCTACTGTCATCTCCATCGCTCACATCGACAGTCTGAAGATGGAGACAGAGACTTCTGCGCCTGGAGAACAACCAAAGTTTCTGGGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134:ENSRNOT00000004391:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]