DreINT0151540 @ danRer10
Intron Retention
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5971872-5974479:+
Coord C1 exon
chr21:5971872-5972140
Coord A exon
chr21:5972141-5974420
Coord C2 exon
chr21:5974421-5974479
Length
2280 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTAATCTTTTCTTTCAAAAGGGA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GGAAAATGCTTTTGACTATCTGGAGTTCCGGCTGTGGATCGGCCTGTGGTCTGGCTTTATGTGTCTGGTTCTGGTGGCGACCGATGCCAGTTTCCTGGTGCAGTATTTCACGCGCTTCACAGAGGAAGGTTTTTCTGCGCTCATCAGCTTCATCTTCATCTATGACGCCTTCAAGAAGATGCTCAAACTGGCTCATCATAACCCCATCAACTCCGGCTACGACCTGGAGCTGGTCACCCAGTATGGCTGCCACTGCACACCTCCAGAAG
Seq A exon
GTGAGGAAAACACCACAATATACTCTGTTTTTTAAATTTGCATTATTAATTTATATTAAAATACAATTCTACATTATTAATGATGACTAATGATGTCCATTTTTACAAGATGTAAGATAAGTTTTAATGTCCCTAAAGTGTGTGTGTGTGAAGTTTCAGCTTAAAGTACCCCACAGATAATGTTTTATAAATCTTTGAAACGGTCCCTTTTAGGCTTTGCTGTGCAGTTTTGGTGACTGTCACTTTAAATTCAAATGAGATTGTGCTCTTTTCAAAAGAGGGCGGAGCTACAAATGCATACGTATCAGCATAGTGCAGATTCAAAAACAAGACTAATGTCCTATGTTAGTGAAAGAGAGATGGTCACTAATGGGCGGGGCTTTTCCCCTCTGATGACACGTATGTTGAATGATGAATGCAATCAAAGTGTTTTTGTTAGTGTTGATCAAGTGTGATTATAAAAAATTACATTAATACATTTTTACTATTAAAAGCTGTCATATTCAAAGACTGTTCCACACAACTGTGTTTAAACCAATGACTGTAAAAAATATGGACGACGCGACAGCCCCTTTTCCCATTGAACGCCTTGAGGGCAAAACGCCTGCTTGACGGGCACAAACTGTCGCAAAAGACTGCTGAAATTGGAGCCTTGACATGCGCAGAAGGATTGTCTGATGGAGCCAGAGGAGGAGCCGCGAAAATGAGCGGAGTCGAGCTTCCAACCAAACGCTTTATGTAAAATCAACCACGCCCCCGAACTTCTCAGCATGCGTTTGCGGTCATATCAACACAAATGGATGTAATAACGTTAACAAATATGAGGGTTTTATATATTCAATCACGCCAGCTCCGGGCCGCAGCGCATAACCTACTCGCGACGTCGCGGGCTGATTCCGGCTCGCATGCGGCAGCGCCGGCTCGCTCGGCCGCCGCATCTGGCTCGATTGACTTGGGCTGGAATCGGGCAGTGAGTCCAGGCATCCGGAGTAGGTCCAGCAGAGGTAGTCAGTCTGAGCTCTGAGGGGTAAATCTCTAGCCGGAACTGGCTTGAGTGTGTTTTGCTATCTGGGTGGTTAGGCGTGTATCAGCAAACTAATAAAGCCCGAAAAAAGCCCTGACCTTAGCGAATAAACAGTGTTCCACCAGGATCATGTATGTCAGAAACTGTAGTTTACTGCTGAACTCATTTTGTCATGGTAAAATAACACAGAAATCGAATAAAAACACTTCAGTCTCCTGCCGAAGCTCAGACGCGCTGCTTTGAGAAACTGTCAATCACAGCTGTCAATCACGATGACACGCCCAGCATTAAATTACTGCTAAAAACAAACTGTTTACAAAAATGAAGATCTGCACCTATTTCAGCACAATAACCAGTGCCTTAATCGACCAGAACCATCTTTCGGGACAGTTTATTGCAAGTGAAATAATTTTTTTTATTTGGGCTCAAGTCTCCTTCATTAACACGGAGGAGGCGGGCTTTATGACTTGTACTGCAGCCAGCCCCCAGGGGCACAACCACGCACAACCATCTCTAGGGTTTACAGAGAATGGTCTGAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGGGCGCAAATGCCTTGTTGATGCCAGAGGTCAAAGAAGAATGGCCAGACTGGTTCCAGCTGATAGAAAGACAACAGTAACTCAAATAACCACTCGGTTCAACCGAGGTCTGCAGAAGAGCATCTCTGAACACACAACACATCCAACCTTGAGACGGATGGGCTACAGCAGCAGAAGACACACCGGGTGCCACTCCTGTCAGCTAAGAACAGGAAACTGAGTCCACAATGCACACAGGCTCAACAAAATTGTACTATTTAAGATTGGGAAAAATGTTGCCTGGTCTGATGAATCTTAATTTCTGCTGCAACATTCGGATGGTCGGGTCAGAATTTAGTGTCAACAACATGAAAGCATGGATCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACAGGACCTATTATGCAAAAATCCCTTTTATAAGGGGTTTGTTATCAGTATTATTATATTAATGTATTAATAGTAACAGTTTAATCTTCATATTTGTGATGAAAAAAGTTACTTTGTTTAATGACGTGTATAGCTGTGTATTATAACATGTTTATATTTTCATAATGTTGTAATTAATATTTTATTTCAGAGAAAACCTTAAATCAACAAAAAAAAACATTAAAACATCATAAACATTAATCTTTTCTTTCAAAAG
Seq C2 exon
GGAACGTTTCAGCCCTGTACTTGGAGAAAATGGAAGCCTTGATGAACAACACTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808:ENSDART00000048399:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.4=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]