DreINT0152426 @ danRer10
Intron Retention
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23184582-23186143:+
Coord C1 exon
chr1:23184582-23184653
Coord A exon
chr1:23184654-23186071
Coord C2 exon
chr1:23186072-23186143
Length
1418 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
AATATCTTGTTTTATGTCAGAAT
3' ss Score
5.57
Exon sequences
Seq C1 exon
TGATTTGAGTAATAACCAGATCAGCACATTGTCCAACCACAGCTTCAGTAACATGTCCGAGCTGCTCACACT
Seq A exon
GTGAGTGTCAATGCGATCTAAGGCTTCAGATTGATGTGTCTTTGTTTTTTGTGCAAACACTATTGTAGTTGTGTGTGTCTTTAGCTGTGCATTGTGTGTGTGCAAAATCAACTTCAGATTTCTTGAAACTAAATGTTTATCTGTGTATATGCAAATATAGGTGCATTATCCACCTATGGAAATACTTGCTCACTTAGGGCTCTATTTTAACAATCTAGGCTCAAAGTGCAAAGAACAGGGCTAACATGTTTGAGCTTATTCTCTTAATGAGTTATAGGTGTGTTTTGTGAATTAACCAATCAGAGTCTCATCTCCCATTACCTTTAAGAGTCATTTGCATCGTGCTATGGCACATTTGCTATTTACTTGGTAGACTTTGTAAGTGGAAAAACTGAATGCTTCGCTAGCGAGAAAACAGTTAAACAGATCATCTGCAGTGCGAGAATGAGAGAATGAGCCTCCTCATTCTTTACTTTCACTTTCACTCTCTTTCGTGGATAAGGAAACGTGTTGTACGCACAGACATCCATTAGCCTACATAATTAATTTATTTTAAGCACAAAGATTTATTTCAAAGCTATTTCTTACTTCAGTTCTAATTACCAGCAAACGAATAAATAAACAATAATAACGAAGTGTGCTCAAACACCTGAGTTATATCCAAATACACATGCTATGCCATATATGTTCTAAAACCTGACAGGTAGGCAAATCTAAGCTTGTTTTTAATAACAACAAATATAAATATGCATATAAAAAGTAACACCAAGAATAATAATAACATTATACCAAAGGCAATTGTAATGAATAAACTAAAAAAACCTCCTGAGATGAAAAAGGCATGAAGGCAGTGGTTTTTATATTTATGTAGAAAATAATATATATTTTTAATATTTTATTAATTTAATTCTTTTTCATTTGTAAAGATATTTGTGTATTGCTGTACATTCTTTGTTTAATTAAGCAATGTACAACTTACACACTCTACACTGGACTTTAGACCTTCTCTCAGCTGGTCTTTTGTGCAGTCTAATTTAGTTTCTTAAAATAGCAACGTACGCATGCTTTGACAGCCATTCTGAATAAATGAATGAAATATGTGTTTTTTTTCACCAAAGCAACCTGAGTGCTGGAATATAATTGGCTAAAGTGGCATCGGGTTAAAAGAACCAAAACAAAGACAGCATTCTGGCACATCAAACCCATTTTCAAAGCAGAATTTTTAACTTCAGCATTGTTTTTTAGAAAAGCAAGAATGTTCACTTAACATGTTTCTCAAATATCTGCAAACATAAGATGGTATTATTATGCGTTAGAAAAATAAAAAGTTTACATACAGCACATTTAAATAAATTATTAAAGATAATAACTTAATTGTCTGTATTGTAACTGTATTGTAATATCTTGTTTTATGTCAG
Seq C2 exon
AATTTTAAGCTACAACAGATTAAGGTGTATTCCTGCAAAAGCGTTCGACGGCCTCAAGTCTCTGCGCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246:ENSDART00000007531:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(42.6=80.0),PF138551=LRR_8=PU(8.2=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]