HsaINT0154516 @ hg19
Intron Retention
Gene
ENSG00000145147 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11086]
Coordinates
chr4:20550111-20550751:+
Coord C1 exon
chr4:20550111-20550182
Coord A exon
chr4:20550183-20550679
Coord C2 exon
chr4:20550680-20550751
Length
497 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGACATATGTATGCTTTCAGAAT
3' ss Score
7.23
Exon sequences
Seq C1 exon
AGACTTAAGTAACAACAGAATAAGCACGCTTTCTAATCAGAGCTTCAGCAACATGACCCAGCTCCTCACCTT
Seq A exon
GTGAGTGTGAAAGTGTGGTACTGAGTATTCATTAATTCAATGGACAAAAGGCAGTCTCTAGATGCTGGACATTGCTATTGAACAAGACAGTCTCTACCCTCAAGGAATGTTTCTATTGGGAGAAACAGACAAAACCACGATACGTGAACAATGTAGACATTAGGAAAAGTATTGCGTTCTATTAAAAAAAACAAAGAATAATTTGTGTTTGTGGGGGGCTTAGGGGAGATCCCTAAGATAGGGAAAATCCACCTTAGGGAAGGGACGGCTGACGCACCAAAGTTGGGCAGGAGTAGGCAGCGGGAAGCATTCTAGGTTGTATTTAGGAAATAAGTATGTTGTGTTAGGGAGACAACACACAAAAAATAACAATATATTGTGTGTTAACACTATCAGTTAATAAGATGCTTTAATAAGCCTTAACTGCTTTATTTTTGGAAGTATTTGGCCATTTTTGGATTTCTGAATAAAACAAATTGACATATGTATGCTTTCAG
Seq C2 exon
AATTCTTAGTTACAACCGTCTGAGATGTATTCCTCCTCGCACCTTTGATGGATTAAAGTCTCTTCGATTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-SLIT2:NM_004787:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)