HsaINT0154516 @ hg38
Intron Retention
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20548488-20549128:+
Coord C1 exon
chr4:20548488-20548559
Coord A exon
chr4:20548560-20549056
Coord C2 exon
chr4:20549057-20549128
Length
497 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGACATATGTATGCTTTCAGAAT
3' ss Score
7.23
Exon sequences
Seq C1 exon
AGACTTAAGTAACAACAGAATAAGCACGCTTTCTAATCAGAGCTTCAGCAACATGACCCAGCTCCTCACCTT
Seq A exon
GTGAGTGTGAAAGTGTGGTACTGAGTATTCATTAATTCAATGGACAAAAGGCAGTCTCTAGATGCTGGACATTGCTATTGAACAAGACAGTCTCTACCCTCAAGGAATGTTTCTATTGGGAGAAACAGACAAAACCACGATACGTGAACAATGTAGACATTAGGAAAAGTATTGCGTTCTATTAAAAAAAACAAAGAATAATTTGTGTTTGTGGGGGGCTTAGGGGAGATCCCTAAGATAGGGAAAATCCACCTTAGGGAAGGGACGGCTGACGCACCAAAGTTGGGCAGGAGTAGGCAGCGGGAAGCATTCTAGGTTGTATTTAGGAAATAAGTATGTTGTGTTAGGGAGACAACACACAAAAAATAACAATATATTGTGTGTTAACACTATCAGTTAATAAGATGCTTTAATAAGCCTTAACTGCTTTATTTTTGGAAGTATTTGGCCATTTTTGGATTTCTGAATAAAACAAATTGACATATGTATGCTTTCAG
Seq C2 exon
AATTCTTAGTTACAACCGTCTGAGATGTATTCCTCCTCGCACCTTTGATGGATTAAAGTCTCTTCGATTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147:ENST00000504154:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(38.6=68.0),PF138551=LRR_8=PU(8.2=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains