DreINT0152462 @ danRer10
Intron Retention
Gene
ENSDARG00000034268 | slit3
Description
slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
Coordinates
chr14:24236113-24236843:-
Coord C1 exon
chr14:24236772-24236843
Coord A exon
chr14:24236277-24236771
Coord C2 exon
chr14:24236113-24236276
Length
495 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTCTGGTTCCTGTCATACAGAGC
3' ss Score
6.3
Exon sequences
Seq C1 exon
AACTCTCCACGGAAATGACCTTTCAACTGTTCCGGAGGGAGCCTTCAACCACTTGACATCTCTATCTCATCT
Seq A exon
GTAAGTATGTGTGTGTGCGTGGGTATATCTGCGTCCTCTCTCTCCCTCTGTTAATGATGGACTCCCAGTCTCAACCTTAGAGACCAGCTCAGGTCTTTAGACTCGATGTAAGTTTTACCTCATTACCTTGTGCTGCCTAAAGAGAGTGCTCAGAGACCGAGTCCCACAGGAAATCTTTGTAAATTTTATTAGGGCTAAAAGGCATCTATTATGAAGGCTTATGGCAGTGTTGCTTTTTTCTCTTCGGCTATATAGTTCCTGTTGCTGGTTTGGAGTGAGGCTACCATAATTCTTTGTTTCCTTATAGAAAAGAACTGTTAAACAAATTAAGACATAAAGGGCCCTTGAATTGAAAGAAGTTCAGTTAGAGTAACTAATGAAATTGGCTTTGTGATGTACACTATAAACAAGGAAAAGGAAAACTACCACAAAATGCAAGTTCCACTGCATGTATCTTTTTGAAACTAAGTGTCACGTCTGGTTCCTGTCATACAG
Seq C2 exon
AGCTCTCGGTGCGAACCCTTTATACTGTGACTGTGAGCTGCGCTGGTTGTCTCAGTGGGTGAAGGCTGGCTTTAAAGAGCCTGGCATCGCCCGCTGCACTGGACCACCCGACATGGCTGACCGACTGCTGCTTACCACCCCCCTCAATCGCTTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034268:ENSDART00000146299:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(40.0=100)
A:
NA
C2:
PF138551=LRR_8=PD(11.7=12.5),PF0146319=LRRCT=WD(100=46.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCACGGAAATGACCTT
R:
TTGCACTGGAAGCGATTGAGG
Band lengths:
233-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]