GgaINT0017174 @ galGal4
Intron Retention
Gene
ENSGALG00000001916 | SLIT3
Description
slit homolog 3 protein precursor [Source:RefSeq peptide;Acc:NP_001183971]
Coordinates
chr13:3970931-3975860:+
Coord C1 exon
chr13:3970931-3971002
Coord A exon
chr13:3971003-3975696
Coord C2 exon
chr13:3975697-3975860
Length
4694 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GTTTGGTTTTTTACCACTAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GACGCTCCACGGGAATGATATTTCCAGTGTTCCCGAAGGTTCATTCAACGACCTGGTGTCCCTGTCCCATCT
Seq A exon
GTAAGTACTCCTGTGTTCTTCAGTTTCAGACTTATAAAACACTACAGATTATTACAGATTGAAGATTGTGTAGCTGTTCTGTTCTTCCTGAGTACTTTCCGTATTCTGCTCTGGATATTCACAGAGCAAATGTTCAAAGGAAATAAAATAAATATAAGAACCTGTTGTTATTAGTTACCAAAATATTTTCTTAAGGAAAACCAAATGAGCCAATGTGATAATTTCCTCTTCTGTGGACTTTGTGTTTAAGGTTTTCTTTCAGCATTGTCTCAGTGAAATGCAGAGTGTGTTATGGTCTGAGACAGAGACAGAAAACCTCCCACAAAGAGCAAATATTAAGCAAATGTGAATACAGTGCTTAAGAAGTGTCATATGTTTTGCATACTGAAACGTTGTCAGTATATGAATTTGATGAATCACTACCTCAGAAAATATATATTTAATCATAGGGAAATGGGTCAAATCACAGTGTTAATACTCGTAATTTATACAAAATAATTAAAAGTTATTAAAAGTTTCATGTATTTCAAGAGATGATTTGGACTAGTGGAGGTCCTGGGTCTTTTAAAACACAGTTTAATTGATGAAAGAACTGTAAAAGACAAACAGCTGTAATAGTTATGAAACGAACCTGGAGTTTAACGGTCAGTGCCAAAATAGCAAACAGAAAATGTTTGCTGAGATAATGTGTGATATTACACATGATGTGTGTGCATGTGCACATTCAACATAATTTTTTATCTGTTTCTTAAACTTTAAACATTCCCTCCAGAAACCTTACTGAACACAACAGCACTGTTATCCAGAAAATGTGCAAAAAGCAAATATTTACTGGATAGCAAATTTGTCCCTGGGCTGTGATTTCCATGCAAAGCTTTCTATCTCAGTCTTTTTATAGACAAAGAAGAATAAACATATCTCAGATCGGTACAGATAGAAATAATATATGAGCAACTTAGGAAATTTCAGCTGCAACTGAGAAATAACCTCTCCGTTTTGAACTTACAGCTTGGCATCTTAGTCAAAGAAAATACTCATCTAGCACGAGGTGTATTTCATTGTCATGTTCCAGCATAGTAAAGTCGTTTTCTGTGTTGTTTTGGAGTGAAAGTCTGACAGAGCCGAAGCCCTGAATCACCTTTTGGAATGCAATGACACCTTCCATACGGGGAGTCTGGCTTCTGAGGGTATTTTTAGAATGCATGAGATAAACATATCGTGCCCCATTTGTTTGGACTTTCCTCAGGGTTCACTTTCAATGAAGTGCAGACACAATTTTCCTGGGTAAACCATTCACCTTGGGGAGCGATAAAAACCTCTTTGGTCCAATACAGTCACTGCAGTCTGTCTGTTTAGATGTATGTGCTGCCAGAAATGTAAAACACACAAAACACAGATGAACAGTAATAAATAGGATCCATAAAATAAATAAGACCTGTCTGGGGTGTAATTTTCACAGCTGAACAATTTGATTTTACAGGACAGTTGTGCTCTCCAATTTCTTAAAGAGGATGCGGTGTGATGGTCCGAAACTTCCAGCAGCCGCAGTGATCTTGCTAGATGTCAGGCTTTTCACAAGCCAGCAAAGACTGTGCTTATTCAAACAAAGTCACGTAGATTTGCAAATAAATTGTTTTTGAGTTCTCCTGATACCTAGATCTTTGAGCAGAAAGCATATGCATGGAATAGTTTTTAGATGGTATGAGAAGCTGCTACTCATCAAACTTGTACCTGCAGGAGAACATGTTAGCTGTATGGCTGTGGGTAGGACAGGTGTGAAGGAAGCTGACTACTGGGTTACTGAGCTGCGTATTTTTCTAGCAGAGACAGAAGTGTTGGTTTACTCAGTCCTTCGTAGTAGATTTTAAATGGTTTGCAATTGGAAGAACAAAACTGACACCTAGATACTTCAATCACTTTTTCCAATGCAGTTTAAAGCTTAGGAGAAGAGAACCACTGAATTTCCTTTACACTGTAAATATATTATCTGAATGTAGCTGTTGTGACAAACTGTAACATAAACCTCACTAAAGACAGACAAGAGCTTATATGTGATATTACCATACACTGTTCTGTCTGAATTTACAACTTTATTTACTTGAATCACATAATTAATTGTCTATTTAAGCCATGACTGCTAATTTGTTTAGTCCAGGTTAATGATAAAAGTGCTAAAGCACTGGTGAAGAATCATGTATACTAATACCTAAAAAGAACTCAAAATCTGCTGGGGCAAAGCAGAACTGCTCAGTGAGGTCAGTTCCCACATATGCTGTCTTCTCATCTCTGTCCATTTGGTGATACACACAGCTCTGTAACCAGTTTGATTTGCCAAATACTGCCATGCTCCAGGGATTTAGCAAAGAAACTCTTCTTAATTGTGTACAGAAGGTCTTTTTCTCAGACGTTACTGATAAACAGCTCAGATTCCTGATTCTTTTGAATCATCTTGCCTTTAATGAATAGATGTGTTATCAAGAAAGGAAATCAAATGAAATAAGCAGTCCTCCTATAGCACTCTGTATCTTCACATATTCTTGGCTAGTTATTCATAAAATAATAGAATGGCTTAGTTGGAAGGGACCATAAAGACCATCTGCATCCAGCTCCAACCCCTTCTATGGGCTGGTTGCCACCCAAAAGATGGAGCTGCCCAGGGCCCCATCCAGCCTGGCCCGAACCCCCATGGGATCTGGCACCAACAGCTTCTGTGGGCAGCCTGTGCCAACGCCTCACCACTCTCTTGAGTGTAAAATCCCCCCCTAGCATCTAATCTAAATCTCCCTTATTTTATTCTAAAGCTGGTCCCCCTTGTCCTATCACTATGGGATCATGTGAAATGTTGGTCTCCCTCCTACTTTATAAGCTCCCCTTAAGTACTGAAAGGCCACAGTGAGGTCTCCCTGGAGCCTTCTCTTCTCCAAGCTAAACAAGCCCAGCTCCTTCAACCTTTCTTTGTAAGAGAGGCACTCCAGCCCGCAGATTTTAATTGAACTTATTATAAGTTGTCTCCAACAAAAAAAGTTGGCTGAGCAGAAATATTTGCACCATGTTTTGTTAATGCTGCTAGAGATATTTTGTTACAGCACAAGATATTTTTACCTTCTTCAAACAGTGTGGGATAGCAGGCAAAGAAATAGAGTGCATATGTTACAGCACATGAATGAGAATAATTCACAACAGGTCTGAGATATGGGGGAAAAAAAGAGCAAGCAGAAAGATACGTGCAGTAATTTCTGTAGTTGTACAATAATGTTATTGGTAATCAGTTCTAGTCACTACAGGGCAACCTTATTTCCAATGTACTTTATGAAGATTAATTAACACAGGTAACTGGGCTTCAATTATCCTCCCACTGCTGTTTTATATATTGCAGTTGCTCACTGCTGAAGTTAATTTCTAGGTCCAAATTTCACTGCTGTATTTTGTCTGACCTTGGACAAGTGAGCCAGTTGATCATAGTTACAGGGTCAAAAAGTCAAATGAGTAGTTTTTTTCCCATTGTAAGCAATAGAATCACAGACGGAATGGATAGATATTTTTTAATACTGTGCTTTAGTACACATTTAATTTTGATGAATGAGCCCTAGACAGAGTTTGAACCTATGAACCTTCATTATGAATCTGTCTAGGGCACAGTGGGTTCATTAGTCACTCCAATAGAAATGTATCAACAAATTTACTGAGGTTTTTATCGTAATATCCTGTCTGATATTTTTATTTGAAAGAAAATTATGTTTAAAATACCATATTAAATATTGTTTTTAGCATATGTAAAGTCTAAAACACAGTTTGAGTTATTGGTTTCTTAAGTATCTTTTCCACATGCTGATCTGTAACTATTTAGTTAATTATTTTCCCATTGCAGTTCAGGTGTTGCAGTTAAAGCCTTTCAGCAAAATAAATGCAGTCTTCCAGCATACATTTCTTCACACATCCAGAAATTAATGGTTTCTAGACTGATTTTTTTAAAGGCTGACCTTTGTTTATCATTGACTCATTGCTTAAAATGGCACTTGAGAAAGAAATAGTCAAAATGAGACAAGGCAGCACCTCAATTTAAGGTAAAAATGTTTTTGCGTTTTGATTTCTTTTTCTTTTGGGTAGATCTCCATTCATAATGAAGAAGTTTTGTGAATTATAACTGCACTATTTGAACGCATCTGCTTCAGCCATGCAACGTCACTCGAGACGGGTTAACCTGCAGATGTGTTTTCAAAGCTGTAAACGAGCTTCATAGACACCAGGTTACAGCTTTGAAAATAGGGCTATCCTCTGTATGCATGACTCATCCAACGAGTCATCAGATTCAAACTAAATAACACAGTTCACTGGCTCATGAAGGCCAAAGAGTTAAATAAAAGAAACCAACCTGGAAAATTCTGTGAAAGCAAATATGTCTCTCGACATTTCTCAAGCACAAGTTTTTGGAAAAGTGATTTATTGTTTGAAAAGGTGATTTGTTATTAAGTATTTATACAACTTCTGTAACTAATGATGGAAAGAAAGAAGAGGAGGAGGAATATTGGGGGAGGTAATTCTAGGAGACTTTCTGAATATTCAGAAGATTTATTTCACACATTTTGAAATAAAGCATTCTGGTACAAGAGTAAAATGTACTGCATTGAGATCAGAGATGTTATCTTTAATTGCAAACCCAAATAACTGCTGTTTGTTTGGTTTTTTACCACTAG
Seq C2 exon
GGCTCTAGGTACCAACCCTTTACACTGTGACTGCAACCTCCGCTGGCTTTCCGAGTGGGTGAAGGCAGGGTACAAAGAGCCAGGAATAGCCCGCTGCAGCGGGCCGGAAGCCATGGTGGACAGGCTGCTGCTCACAACACCAACCCACCACTTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001916:ENSGALT00000002967:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]