HsaINT0154553 @ hg38
Intron Retention
Gene
ENSG00000184347 | SLIT3
Description
slit guidance ligand 3 [Source:HGNC Symbol;Acc:HGNC:11087]
Coordinates
chr5:168710895-168712354:-
Coord C1 exon
chr5:168712283-168712354
Coord A exon
chr5:168711059-168712282
Coord C2 exon
chr5:168710895-168711058
Length
1224 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTTCCTGTTCTGCCTCCTAGGGC
3' ss Score
10.92
Exon sequences
Seq C1 exon
AACCCTCCATGGCAATGACATTTCCAGCGTTCCTGAAGGCTCCTTCAACGACCTCACATCTCTTTCCCATCT
Seq A exon
GTAAGTAGCAGTGTTTCTCCCCAATGAACATTCAAAACATGAAAGCATGAAAGTGTCAGCGACAATGTCATCACTGTCAGCATTTTGGCAGATGTCCTTTCCTTATGCATACAGTATATTATACAACTATGTATCCACACTATGCATATTGTCTTGTTTCCCACCTCAGAAGCCTTCAAAGGAATCCTCAATTATGTAAACACTGTAAATATTTAATAAGAACTAATAGAAAACATGTACTATGGGGTAAACACTTTAGATAAGTTTTCTATTTATTTCTTACAACTGTAAGGCATTTTTATCCTTTTATTATATATAATAACATTGTGTCTAAGCATGGCACAGCTAGCAGATGGCAGGGCCCAGGATCAGATCTAGGTTTGCCTTGACTCCAAAGCACATATTCTTAACCACTTTGCACTCTGCAACAGGTATTCCCTTCTTATTTTACACAGGAAAAACTGAGGCCCATAAATATTAGGTGACTAGCTAAAGTTTGACTATCAGGTCAGTGAGATGTTGGACTAGAATCTAGATTCCCTCACTCCCAGGCCAGACCTCTCTTCCACAGATCAGGAATCTCTACATTTTTTTATACACCTCTGTCAGTGAACATTTTCGAGTTTGTATTCCTTCTATATGCATATTTAATTATTTTCATAATGTGTGCATACACTATAATACGGATATACTACGTATGCATATTCTAAAACTTTCAAAAGTAGAATTGTTAAAGGATATAATTTAAAAAAAAAAACAGAATTTCTAGTATTTTCGTCCCAGTCACAACTGGGATGAAAGTCTAGCCAAGTGGTTTGAAGCTGCTCCCTAGGTTGCTGGGTTTCAGAACCTTCTCTGCAGAGTATATCCTCCAGTGGACCCTTCAACAGGGCAAGGGAACCAGATAATCAGATGGCCAGTGATCCAGGAAGCTCCCTAAAGGAGCTAGGATGGGGTTGAGTTGAAGAGTGAGTCTTACTTGCGTAGGTGAGAGCCACGCCTCAGAAGTGGAAGGGGCTGGGATGGGAGTTGAAACTTCCACAGGATTGGAAGTACACTCTGGAGATATTAACTTTGCCACAGTGGAGACGACTACTCCGCTGGCCCCATATTGGATACCTCCAGTCTAGCCAAAGTCTGAAAATGCATTTCCAGAGAGCCAAGGATATGAAGGCTACTGGCCAAGCTGGGCAGGGGGCCCTGACTTCCTGTTCTGCCTCCTAG
Seq C2 exon
GGCGCTGGGAACCAACCCACTCCACTGTGACTGCAGTCTTCGGTGGCTGTCGGAGTGGGTGAAGGCGGGGTACAAGGAGCCTGGCATCGCCCGCTGCAGTAGCCCTGAGCCCATGGCTGACAGGCTCCTGCTCACCACCCCAACCCACCGCTTCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184347:ENST00000519560:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=PD(11.5=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCCATGGCAATGACATT
R:
CTTTGCACTGGAAGCGGTGG
Band lengths:
235-1459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains