DreINT0156461 @ danRer10
Intron Retention
Gene
ENSDARG00000044655 | st14b
Description
suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
Coordinates
chr21:25245780-25248067:-
Coord C1 exon
chr21:25247951-25248067
Coord A exon
chr21:25245903-25247950
Coord C2 exon
chr21:25245780-25245902
Length
2048 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
TGCTTTTCTTTTATATCCAGCCA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGAATTGCAAAACTTGGGAGTTCAGGTGTCGAAGTGGCCGCTGCATCTCAGCACAGAAGCAGTGCAATGGCTACAACGACTGTGGCGATGGTTCTGATGAATCTCGGTGTGCGAAAT
Seq A exon
GTAAGGAAAAAAATTATTGAATCAAAGGTATTTTGCTGTTAGCTGCATTACCTGGGGCCTCATGTACAAAGACTTGCGTTGAATCTATACTAAAACATTGCGTTTGTGCAAAGCTGTAAATGTGCGTACGCAGTAAAAAATTCAGATGTATAAAACACTGTTTAAGCGGAATCACATGCATATTCTCTTTGTACATCTGAATTAATGTGAAACTGAGCGCACGTGCACGAATGCAAAACCCCTCCCTGCCTCCTCCCCCTAATAAATATGGTAATGACTCTACTTTAACAGAACCAAAGGAAAAAGCAATGGCAAAAGCAAGTAAAAAGAGAAGCTTTGAACAGAATGGGAATTGGAGGTGCTCGTTTCAGAGGTAGACCAGAAAAAAACTGTGTTATTTGCATCTTTGTCCTCTAGTATAAATAACAAAAGGAAAAAAAATAGAATGGTAGAGTTTAGTTGACGCGGTTAATGCAGTGGGGTCTGAACATCGCACTGTGTGTGAATTAAAAAAGAAATGGTTCGATGTAAAGGTGTCAAATTTTATAGTGTCTATTTAGGCAAATGGCACACCTTGTTGGAATGAGTTGAGTGACCCACCCATCAACATAACTAAAGAGTGCGGCCAACAGCAGCGTGAGTGGTGTACTGTAGCTCGTAAAGCGCATCGCAACATGTTGTTTGACACGTTCGATTATGAACTCGGTTTGAATCCAGCGTCCGATGAACTCATTCTTTTTTCTCCACTACATATCAGATTTTGCCAACTCTTGATCCTGAGGTAGCAAATGAACCTTTATAGCAATGTGCGTGCAGTAGATCGCTCCGATTAGATTGGGAAAACCGGCGATCGATGCAAATTGCGCTTTAATGTTTGGCTTGTCGACTGCATGGTATGGAAACCTTATATACCTGCTAGACATGCAGATGATCCCATCCCTCAAAGCTACCATTGCACAGCTCAAAGACATTTTGTAGTGTGCAATTTAACATACTTGCCTCTAGGAATCGCCAATGGAAATAAAACAAACAAACAAACAAACAAACAATAAATGCACATACGCCAGGCATGATGTGGCGTAGACCAACGCACATTCTCACGTTCATTTCATCGTTAGTAAATCCAAACATGAGCGTGAAATCTGGCGTACGCAAAGTTTTTGTGTGTACTACGTTGATACATTAGGTCCCTGGTCTGTTCAGCACTTTGTCCCTGTTTGACCTTAGTTTATCCTTTTATATATAAGGCAATATAGTAATAGTATTTTTGCCTAATTATAAGACTCAATGGGAGTGAAAGCACATCATAAATTGAAAGACTTTTTTTTTTTTTACTTTTTAGGGAAATAATATCTAATCTTCTATCTATATTTTTTTCAGCAGCATTTTCACAAATTTTTTTCATTTTACTGGACAAAAAAAAAATCTTCTTAATCCTATACTGATACATTCATTTTAAAAATGCTGAAAATGTTTTATAATAGACCTGAAAGCATCTGAGGATATCTCTTAATCATTTTATAAATGGTTTTACAGCAATATAAATAAATATGCTTTATTATATATATCATGCATATCAGAAATTTTAGTTATGCTGATTTAGTTGACATCTAATGTGATAAATCATAAATCATCTGAGTCAAATCATGTAGACAAATGGAAATATTATTTATTTTCATGTAAATTATTGTCCATGTGTTCACAGCAGGGACAGTTTATACAAAAACTGTGTATTTTTCCTTAACAACAATGTTGATTTGATGACCTTGAACAGAACTGCAAATCATTAGAAAGAGCAATAAATCTGTAAAATATTCCACCAGTTTGCATTTCTTCCTACATAAAACCTGGCTCTTCAGAATAGTGCTGCAGGTTTTTGTGTCATCTAGTGGTTAATAGGTAAATAAAATCAATTCATCTTTTCTTTAGTCCTATTTCACTGTGCGTTTAGCTTTTTAGTTTACCAGCACTGAATTGACTCTTATAGGTTAAAAATATCCTCGATGCCAACATAAGCAGTTACTGACTTGCTTTTCTTTTATATCCAG
Seq C2 exon
CCATAGCTGTTCACTGCTCCGATTCCACCTATAAGTGCAAGAATAAGCAGTGCATTAGCAAGCTGAACCCCATGTGTGATGGAGAGACTGACTGTGTGGACGGTTCAGATGAAGCCGAGTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044655:ENSDART00000147860:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]