HsaINT0159711 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130068403-130068964:+
Coord C1 exon
chr11:130068403-130068516
Coord A exon
chr11:130068517-130068841
Coord C2 exon
chr11:130068842-130068964
Length
325 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TTGTCCTCCTCCTTGAACAGTGA
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTTGTCCGGCCCAGACCTTCAGGTGTTCCAATGGGAAGTGCCTCTCGAAAAGCCAGCAGTGCAATGGGAAGGACGACTGTGGGGACGGGTCCGACGAGGCCTCCTGCCCCAAGG
Seq A exon
GTGAGGCCCGCCCCACCCATCTTCCTGTTGGGGGCCTCGCCCCTGGAGGAGGCTGCCCTGAGCACACGCACATGCAGGACGCCCCGAGTTTAATGAACACAAACCACCTGTGTGTTAAGTGTGATGAGAAAGGGCTCTGGTTGGGGGAGAATTTTCCAGAAGGTGGAGAACCTGTAGCAGGGCAGGGAGGCCAGTGGGCGTGGGTGGGGCAGGCCTGGGTGAGGGGGTAATGTGCAGGGGCCATGAGGCGCCATTGGTGGTTTCTGGCTTCTGGTCGGATGCTGCAGAGGAATTGAGCCCCTCCCTTGTCCTCCTCCTTGAACAG
Seq C2 exon
TGAACGTCGTCACTTGTACCAAACACACCTACCGCTGCCTCAATGGGCTCTGCTTGAGCAAGGGCAACCCTGAGTGTGACGGGAAGGAGGACTGTAGCGACGGCTCAGATGAGAAGGACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCGGCCCAGACCTTC
R:
CGCAGTCCTTCTCATCTGAGC
Band lengths:
236-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)