RnoINT0144084 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32244108-32244587:-
Coord C1 exon
chr8:32244474-32244587
Coord A exon
chr8:32244231-32244473
Coord C2 exon
chr8:32244108-32244230
Length
243 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GCGTCCTCTCCCATAAACAGTGA
3' ss Score
6.65
Exon sequences
Seq C1 exon
GTTGTCCTGCCGGGAGTTTCAAGTGTTCCAATGGGAAGTGTCTCCCTCAGAGCCAGCAGTGTAATGGGAAGGACGACTGTGGAGATGGGTCTGACGAGGCCTCATGTGACAATG
Seq A exon
GTAAGACCCAGTCCTGGCTGCTCTCCCGTGAGGGAAGGTCACTCTTCCCACTAAAACCACACCCCAAGGTAGGAGCTGGTCTCAGGCCCTATGGAGTGCTCGCAGAGATTATCAACCCAAGTTTCCTGTGTATTAAGCCTGGGGAGAATCTTCCAGAAGGTGGAGGACCTGTAGCAGGGCTGAAAGGACAGTGGACAAGGTGGATGGTGGTGACATAACATGCGCGTCCTCTCCCATAAACAG
Seq C2 exon
TGAATGCCGTCTCTTGCACCAAATATACCTACCGCTGCCAAAATGGCCTCTGTCTGAACAAGGGCAACCCTGAGTGTGATGGGAAGAAGGACTGCAGCGATGGCTCGGATGAGAAAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.3)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCCTGCCGGGAGTTTC
R:
ACAGTTTTTCTCATCCGAGCCA
Band lengths:
236-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]