DreINT0156739 @ danRer10
Intron Retention
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10745562-10745920:+
Coord C1 exon
chr4:10745562-10745669
Coord A exon
chr4:10745670-10745788
Coord C2 exon
chr4:10745789-10745920
Length
119 bp
Sequences
Splice sites
5' ss Seq
TTGGTATCA
5' ss Score
-0.86
3' ss Seq
TGTGTGTGTGTGTTTTCTAGGAT
3' ss Score
12.86
Exon sequences
Seq C1 exon
AACCACAACCTGACAAACGAAATGGAGGAATCTTTGGGTTTTACAGTGTTTGCTCCAACAGACAACGCAATACAAGATTACCTAAAAAGAACAGGCAAAGAATCATTG
Seq A exon
GTATCATACAAACACACTAATATGCATAGCCTTATTTAATATTATGCAGTATAGCATCTCATTCTTGCATCATGTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTAG
Seq C2 exon
GATTTGAATGTGACCATGTATCACATTATACTGACTGAGATTTTAAAAGACGTAGATTTGGTGGATGGACTGTACAAGGACACCATGCTGGGCTTCCAATACCAACTGGGATTTTTCCGTCAAGATAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748:ENSDART00000136000:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(28.9=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(35.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACAACCTGACAAACGAA
R:
ATCTTGACGGAAAAATCCCAGT
Band lengths:
234-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]