HsaINT0160049 @ hg19
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104089515-104093005:+
Coord C1 exon
chr12:104089515-104089622
Coord A exon
chr12:104089623-104092873
Coord C2 exon
chr12:104092874-104093005
Length
3251 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
CAATTCTGTGTGTGATCCAGGAG
3' ss Score
6.87
Exon sequences
Seq C1 exon
CAATATAATCTGGCGAATGCAATTGAGGCTGCCGATGCCTACACAGTGTTTGCTCCAAACAACAATGCCATCGAGAATTACATCAGGGAGAAGAAAGTCTTGTCTCTA
Seq A exon
GTAAGTGTCAAGAACTATAACTAGGGAAGTTATTTTGTGAAAATTCAAACACTCAGTGTTTGTAATCCATTAGTTGTGTGCCATTTCACTCCTTCATCCTTGTCCATAGCCACATACTTGACGTAGACTGGTGCAGAGACTCTCTCATACACAAACATCCCCTCGGTCAGAGCTGCTGGATGCTACTCACATGCCCCTGGAATTGCACACTTGAGCCTGTATACACAAGGATGCAGGTGTGGTGCATTAAGGGTGTGGTGTTGGTGTGTATATGTAAATATGAACAAAGGAAGCCCAAACCCACAGGTGCTTGGCCTGTTTAGGATCTATCTATAGAACCATCACTCTGGTTCTAGCCCGAGTGATGAAACCACATGGAGAAACCACATGGTTTCTCCAGAGCAGTGGTGGGAGAAAAGAGTGGGCTCAGGGGTGGCTTCTCGGGGCTTTCAGTGCCACCCCCATCTTATTAACATCCTCATCTCAGCCACCCAATATAAACATGGAAGTGAAAACAGTGTGCTTGCCGTGCAAATCCAGCTTCAAATGTGTCTTCTCATGTGGGGTTGGGGTGGGGTGGCCCTGGGCCCTTCCCGTATAAAAATTCTGGAGCCACTACTGAATATCGGATAAATTATGATCAGCTTATGGTAGTCTTAAATACCTGGAGAGGTCATTTGGACTTAGTCCTGTAAGAAACAGGATCCACAAAAGAGTTTTAAGTCAGATCGTGGCATGATTGAAGCTTTTGAATTAATTCACAAAATCCTTTGACAAACTTTGACTATTTACCCCTAGATGTTAGGAATCAGGGAAAATAGAGAAGGGGAGAAGAGGAGGAAGAAAGAGATAATCCACCCCTCTAGGTCCCTGCTGCTGACATCTTAGCTACTGGAACCAAGGAAAGGCCAGGGACGGGGGGAGGAGAGGAGGGGTGATCATGAGGATTCTTCCAGCTTCCTGGGACACCTGCATGCTTGTTCCTATGAGCTCAAGTGTGTAATTCCAGGGGTATGCATAAAACACACAGCAGCTCTGCTATGGGGGAGGATTGTATATGGGAGAGTCTCTGTGTGAGGCTGTATTAAGTATGTGGCTATGGACGAGAAGGTTTTGATGGAAAAGTGAAATGACACGATTGAACTGAAAACGGTGTTTGAATTTTCAGCAAATAGGGATTTTTCTTATTTAATAAGGAAATAAGGAAGGCTGCTCTTCTTCCTCACCACCTCCTAAATTATCCCTATCCACTCATCATGTCCAGTCCCACCTCCTCAGGGAAGCTGGCCCTGGCCACCTGAGGTGAGCTGCTCTCTCCCGCCTCTGAATTCACACCATGTGTACCCCCTTTCAGCATTTATTATGTATCCCCAATAGGATGAACTGTCTTCTCAAAGAAGCAAGTCTTAGCTCTCCAACTAGATTATAAGCTCTGAAGGCAGGGAGAGTGTCCTAAACTCCTGTAACAGGCATGTTGCACTCCTGGGATGGAACTGGAAATCTTCTACCTTGTCTTTTCCCTGCCCTCTAACCCAACCCATTTCTTTAACCTCTTCAGTGAGAAATGTTATTTTTCTGCCACAGAATGAAACTTCAGACAGTCCCATAGCCTCTCTGCCTTCCCAAAAAGTCCTATAATCACCTTGGAGACAAATGTACTTTAAGTCACAAACTCAGTCTCAGCTAAGTAAAAATAAAGAATCCAATTCCTTACAATAATTAACACTTTGAATTGGATTTAAAACTAGTTCTTCCTCCCTCCCTGCTCCACAGCAGAGCTTGGTGCAGAAAACATCTCGGTCCTTGAATCAAGGTCCACAGGAGATGGAAAACATACCAATTACATAAACTGAGAATTTGATAGAATGAATTGTTTATTGGATATAAAGCTGTATAAATGAAAGGTTAAAGTGAGAAAGAAATATCACAATGGTAGCAATCACAGGATTCACTTATGACCCCTAAAGCTAGGAGAACAATGGGAGGAGGTTGGAATTTCTAAAATGTATAAACCTAGAGCCTCTGAGAAGGGGTCACTATTCAGCTGGTGCTGGTGTCTTTGAGCTTGGATGAGTGGCGAGGGTCTCTGTGGGTCTGAGACCCAGACCTCCAGGAGCAGGCATTGCCTGGCTGGTGTCTTATGAGCGGAGAGGGCAGGATTAAGCTGGCTCTGCGAGTGACGGGAAACTGCCAACCAGATTCAGGTGCCACTGCAGGGAAGAGAAGTGAGGCTGGGTGATGCCAATAGGAACAGGGAGAGAACAGGAAGGACTGAGTTCCTCTTTCCCCTCCAGCCCTCTGACTGTCTAGAGCTTCTCATTGGCAGACCCTAATAGGGAGCCCCTTGCAAAGGAGAAATGTGGGAAACAGCCTCAGCCCCAGCATCATCAAGCAGAGTGTAGGAGGTGGATTTGGAGCTGACAGGCAATCACTTAGGAACCTTCTCCTCTCCTTCCCCACAGGATGTTTCTCTTCCCTTTCTGATCTCACTAAATTCCATTTTGGTTTCACTAGGTTTGAAGTAGCGGGGTAAGAAGGGTTAGTGGTTGGGAAGAGACATCAAGAGGGTAAGAAGGTTAAGAGGGGTGGAAGAGGGCAGGAAGGACCCTAAAACCACAGAGCCCACCCCTAGCTCTGCCCCGGGGAGCCTGCCCATCCAGGCTGACATAGGCTCTCTCAGACACTCCCCATGTCTGAGCCACAGCAAACACCCACATTCTTGTCCCAAGCCAACTATGCAAGTGCAAATCGGTCCCACGCAGCAACAACCCTCCTCACTTCACCAAGAGGCAGCTCACCAGCAGTCCCTGCCTTGGTCAGACCCCATCCAACATGCCACCCTATCTCCACGAGACACAGATCAAGGTCCTTGGAGCATCCTAGTGAAGCTCCTCTCGTGCCCCAGAGGTGAAAGGCAGGCTGGGGTGTGGGGACTCTAACTTCTCAGTAGTTCTGCCCAAAGAATTATCACCTTTAAAATCTACCCCCAGCTCTCATATCTTCAGTCTGGGTTTTAGAATCCTCTAATGAGTTCTTGACTGTGCTATCTGGAAAATTTGTAAGTTCTCTGAAGCCATCTGTTTCACAACTCACTTTCATATTGAATATTGTGTCTTAATACCTCTGTCAAAACTTCCACTTGGACAAGCTGTTGTTCCTCTTTGTAATCTCCACAGTGACAGCACATGGGAGAAGCTGGGTAACTGTCAGGCTGATCTCTTGACTGACTTCCAATTCTGTGTGTGATCCAG
Seq C2 exon
GAGGAGGACGTCCTCCGGTATCATGTGGTCCTGGAGGAGAAACTCCTGAAGAATGACCTGCACAATGGCATGCATCGTGAGACCATGCTGGGTTTCTCCTATTTCCTTAGCTTCTTTCTCCATAATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-STAB2:NM_017564:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(29.2=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(35.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)