GgaINT0112637 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56852918-56854732:-
Coord C1 exon
chr1:56854625-56854732
Coord A exon
chr1:56853050-56854624
Coord C2 exon
chr1:56852918-56853049
Length
1575 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
ATTTAATTGTGTGTTTGCAGGAT
3' ss Score
8.93
Exon sequences
Seq C1 exon
CAATACGGCCTGGCAAATGAAATAGAAGCTGCAAACACATACACAGTGTTTGCCCCAAATAATGATGCCATAGAAAATTACCTGAGGGGTAAAAAGGTTGCTACTCTG
Seq A exon
GTATGTATTACTCACAGGATATGTCCTAACAACTGAGGGTCTCATTTCAGTTTCAAGTGGATGGATTGAAAGGATACAAAAATAGGAAGAGGTATTTGTTATCCAAGAAGATAGCAAGTTTGTTATTACCACCAGCAGAGATGAGGAGGGGTGGATCCATGTATTTTCCTGGTTTGCTAGAATAACTTAACTATTTGTTCTGGGCTTTGGCATTCCCTGAATTAAAACAACTCCATGAATATTCAAGGTATTGAACTAGACTTTCTCTGATACCTCCAAAGGGAGATCAGAACAGGAAGGACCAGGAATAACACTGAAATGGCTTTCCTAGGTGAACAAGTCCAATCCCCTGTCATCACTAGCAACCTCATCATTAATAGCACCACAAAATCCTGTGACTCCTTCTTACAGCTATCCAGACATTTGTCCCCATCACTCCTGCTGGAACAGGAGGAGTGGAACATCCCACACCACTTCCTGCAAACTGTTCCAAATACCAGCATTCAAGCACTTCTGACCAGTCCCACAGTTCAGAAAAACACCTGAAGATCTCCTGGCTAGAAAAAAATTCCTCTAGCAAACCCCATTACCACTGCCCTCTGCCAGCAGCCTGGTGCCAGGCCTAGGCTCAGCCCAGCCATCAGCTCCCCACACCAGTGTGGATGTGGTCATCCCACCTCCTCTGACAGCTTCAGGCCTTCCTCTCAGAGACAGTTTATATTATTTTGACAGCATACTTCTGGCTAGCTGCTACCCCTTTATGCTTATGCCAACATCATGCTTTAGCTGAAACATACTCTGCTGTACTCTATCTCTGCTTCCATAGTCTCCATTTTCAGTCTGGAAGCCGAGGGGCACAACATTCAAATGACTCATCCCAAGACATTAACCACTGACCAGCTGTCCCATAACAGAATCCTGATTGCTACCTCACCAGAAGAAATCATGCATTATCAATGTAAATATCTTCTCAAGTGACTTTTGATCTCCATTTTAATTAGTTTCAGTGTCATCATTTCCACATCACTATAAGAGGCATCTATAATAAATCTCTGAGAAACACATATACAGCTTTAAAACATCAATCCCATTAGATTCCTGTTACACACAAACAGAAGTCCTTTTCATTTTCACTGCTTACCAGTATGCTTCTTCCATCTTATTTCCATACCCCCAGATCTAATATCCTCCTTACAAAACACCTCCAGAGAACTTTGTCTTGGAGATAAGAGATCAGCACAGTGAAGAGATCCCATTTCTTGGCCTCTCAGGAAGTGAGGTTTTGTTAAGAGTGACTTCTTACCCTGCTGTTGACTAATATATGAGACACAAAGACCAGTACTTCACCCTGTGGGCAAAGCCAGGAGACATCACAAATCTTGCAGCCTGGGGTTATTTCATGTTTTCACACACTTTCGAAGGAGCAGAAGATCAAAGAACAGTATGAATGTTCAGGACACAGGCACAGTAGGCAATGAGATTTCCCAGAGATCTTGTTTGCACTCCGAGAAAAGTTATCCTGAATAACTTTTTGTGCTTTGTTACATAACCTTGAATTTAATTGTGTGTTTGCAG
Seq C2 exon
GATGAGGACCAAATCCGTTATCACATTTTGATAGATGAAAAGCTCCTGAAGAATGACCTGCACAATGGCATGCACAGGGAGACCATGCTTGGGTACTCCTACCATGTTGGGTTCTTCCTCCATGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(29.2=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(35.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATACGGCCTGGCAAATGAA
R:
GGCTGTCATGGAGGAAGAACC
Band lengths:
238-1813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]