DreINT0156744 @ danRer10
Intron Retention
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10748402-10748770:+
Coord C1 exon
chr4:10748402-10748597
Coord A exon
chr4:10748598-10748674
Coord C2 exon
chr4:10748675-10748770
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TAGCTGTACATTCTGTTTAGAGT
3' ss Score
4.15
Exon sequences
Seq C1 exon
GAAAGAATATGTTGTTCGGGTCATTATGGTATCAACTGTGAGAAGTGCCCGGGATCCGAAGATCAGTCTTGCTTTGGCAACGGCATATGTAAAGACGGCATCAATGGCACAGGGGTCTGTCTGTGCAACCAGGGCTTTAACGGCACCGCATGTGAATCCTGCCAGCCTGGCAAATATGGAATTCATTGTGATCAAG
Seq A exon
GTATTAGCCAATTAAAAGGCTCATACTGTGTTCTGATATAACAATGAGCTTTAATAATAGCTGTACATTCTGTTTAG
Seq C2 exon
AGTGCAAGTGTGTCCACGGACGCTGCAAAGATGGTATAGATGGAGATGGCAGCTGTGCATGTGATCTGGGCTGGAGAGGAGTAAACTGCGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748:ENSDART00000136000:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGCAACCAGGGCTTTA
R:
CGCAGTTTACTCCTCTCCAGC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]