MmuINT0153420 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86894004-86896693:-
Coord C1 exon
chr10:86896498-86896693
Coord A exon
chr10:86894100-86896497
Coord C2 exon
chr10:86894004-86894099
Length
2398 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAAATGTTTTTCTGCTTAGCAT
3' ss Score
4.46
Exon sequences
Seq C1 exon
ACAAGTGCATGCTGTGCTGGCTTCTTTGGCCCACAATGCCAAGCCTGCCCTGGGAAAGGTCAGAATGTGTGCTCTGGGAATGGCTTCTGTCTGGACGGCGTGAATGGCACTGGCACATGCGAGTGCGAGCAGGGCTTCAATGGGACGGCCTGTGAGACCTGCACAGAGGGGAAGTATGGTATTCACTGTGACCAAG
Seq A exon
GTGAGCATTGCTCCTGCCCAGACCCCGGGACCTTCAGCCTCCCAGGCCCAGGCTAGCCAGCAAGCCTATGGTCATAGTTGCCGTGCTCTCTACTCAGCCTCTCCCCAGGCAGCGGGAATCCACCCACCACTGTTAGTGAAAAGTATGAGTTTCTCCGTGAGCCAGTTGAATATTCCCAGCATTTCGGAGGCTGAGGCTGTAAGATTTCCCTGGGTCTGAGACCAGCCTGGGCTACAGAGAGAATCACTGATTTATTTTTGTTTGTTTGTTTTAAGCCTGTTCTTTTCCTTGTATAGAGCAATGTTCCAAAACATTTCCAGTCATTGTCCTGGATGTACCCACCTACTCCCAGTTTCTTTCTCTGGCTCTCAGTCGGCCTGTGTGTGCTAATCACCATGATTAAACATCCACTGTACTAGTTGCTCTGTAGCCACCTTGGGGGTGGGGTGGGGGGATACAGATCTATCCTAATGATTCATTTAGTCAGGAACTTTATTTGCTTTGGAATTGTTGTGCTGAAAATACAGGTGTTAAGACTGGGAACATGAGTGAGGTCCCCCAAGGTTAGGAGAAACAGACCTTAGTCTGAATCCATATCTTTCTTGACCCCAAAGCCTGGCTCTAACGTCAAACTGTCCTCTTTAAGAAAGTCACTCCTTGATCCACCATCACTGAGCAATGTGGCTTGATGTTTAATCAGTTTGAGGCACATCCTCTTGAACGTCCACACCCTGGCTTCCTTGTCCCCAGGACACCTGCCAGAGCTTGCTGCTGGGATAGAAAGCAGATCCTCCATCCAGCTGGTCCCCAAACCCTCAGCTCAGCCCCCACTGCTTCCTCAGCAGCCAGCCAGAGCCACACAAAGCTAACACATAACAGAATTGCTGAAATTTGGCCTTATAATATCATTGAAATTGGATGTGGGTTTTATTTTTCTGTGTTGTTTGGAAGACTTGCCCCTGTTTATGGAGCACTTCTGGAACTAGAATCTGTGGATGACTCTGTGAGGTCCACCAAGACCCAAAGCTGAGTGGCTATTGTGATCAGTGGTATTCATAGCTTTTGCCAAGTTCTTATCTATTCATCCGTTCGTTCGTTCATTCATTCATTCATTCATTCATTCATGTGTTCTTTCTTTTAGAGTTTCATAAACACATTTCTATAATGTTCTTTCATCAAGGTCCCCACCATTATCCTCCTCGATTCTCCTTCCCCTCCCGCCGAACCCCTTCTTCTTCCCCAAATCCACCTCCTATTTTCTTAACTCTTTTTTGTGAACTACTGCTTTTAATTAAGGTTAAGTGCATGAGTCAGTGGTTGTACCTAAGCAAAGGTAATGTGCCAGTGGGTGGCTACACTGCTGAAGAAGATGATTCCCCGCCTCCTCCACCCCACCCCACCCCCCATAACCTTTAACTGCCTATAGCTGCTTTGGGAGGGGCGGAGCTTTATGAACTCCGCCCCATCCATGGAATGTTAATGAGCTCAGTGTCAAGTAGGTCTTGGGCTGGTAGCAGTGACTGGACTATGATCTACATATAACAGTGCTGATTTGAGTTCATACGTGTTTAATAGCCATGGCTTTTAGTAGTAGCATTGCCCACAGTCTTTATTTTTAATAGTACTGTTTCACTTGCTTACAACATAATAGATTTCCCTATATCTTCTTCATATTTTCCTCAAACTCTTTTTTTTTTAGTTTTGTGTTTATTGAACATTTACTACATATCCTGTCCCTTAACGTTTTGTGCATGCCACCTGATTTACAATAATGTCACTATGCCTTACATGTGAAACTTAACAATTTTTTATATGTCAATACCTGTAAGTCATGACTCAATTTAAGGTAAAATTAAAAAAAAAATCTTCCTCAGCTTAAGTCAAGTTCTTGAGGAGACTCAGGGACTTGCTATAAAATGAAAGGATCATTAGTTCTGAGTCTTTGGAGAAGGCAGAGCAAACAGGTTTCTACAAACTTGATGTCAAATAAACATTTATTTTGAGACAGGGCCTCGCTATTAACCCTGACTGCCTGGATCTCACTACTTCTACCAGGCTGGCCTTGAACTCAGATATCTGCCAACTACTGGGATTGCAGGTGTGCACCACCATGCCCAGGCAGATGGGTATCTTTTGAAGACTGCTCATAGGGTCCCATATGATCCTGGATCTTCAGATGACCTTATCTGAGTCATATTCACACAGCGCCGCACAGTCTCCAAACTGTGAAATAGGACCTTTTCACCTGGTAGCCTGCATCCCTATGTCCTCTGACTCCAGTCCCACAAGACAGACCCTGGTCAGAGAGTGGGATGCAGAGAACTACACCCAGTAAGGGGTAAGGGAAATGTTGGACGTGAGTCAGCATCTGGTCATTTGCAAATGTTTTTCTGCTTAG
Seq C2 exon
CATGCTCTTGTGTCCATGGGAGATGTAACCAAGGTCCCTCGGGAGATGGCTCCTGTGACTGCGATGTCGGCTGGCGAGGAGTGAAGTGTGACAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=47.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types