RnoINT0144364 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27419448-27422804:-
Coord C1 exon
chr7:27422609-27422804
Coord A exon
chr7:27419544-27422608
Coord C2 exon
chr7:27419448-27419543
Length
3065 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAAATGTTTTTCTGCTTAGCAT
3' ss Score
4.46
Exon sequences
Seq C1 exon
ACAAGAGCCTGCTGTGCTGGCTTCTTTGGCCCCCAGTGCCAAGCCTGCCCCGGGAGAGGTCAGAATGTGTGCTCTGGGAACGGCTTCTGTCTGGATGGCGTGAATGGCACTGGCACGTGCCAGTGCGGGCTGGGCTTCAGTGGGACAGCCTGTGAAACCTGCACTGAGGGGAAGTATGGTATCCACTGCGACCAAG
Seq A exon
GTGAGCATAGCCCCTGCCCAGCCCCCCCCCCAACCCTCCCAACCTCTCTCCTGGGGGCAGGGATCCACCCACCATTGTTATTAGAAAGTATAAGCCTCTCTGGGAGCCAGTTAGAGTCCTCCCAGCATTCAGGAGGCTGAGATGTAAGATTTCCCGGAGTCTGAGACCATCCTGGACTGCAGAGAGAATCGCTGATTTCTTGGTTTTTTTGCTCTGTTTTTTTTTTTTTTTTTTAAGCCTGTTATTGTCCTTGTATAGAGTAGTACTCCTTTCCTGTCATTGACCCGGATGTCCCCACCCACTCCCAATGTCTTTGCTGACTCCAGCCCAACTCCCTCTCAATCAGCCTGTAGGTACTAATCACCATGAGCAAACGTCCGTTGTACCTTCTGCCGTAGTCGCTGGGGGAAAACAGATCTGTCCTCAGGACCCATTTAGTCTGGAACTAAACCTACTCTGGCACTGTTGTGTCCAAAATATGGATGCTAAGGCCGGGAACATGAATGAGGTCCCCCAAGGTCAGGAGAAACAGACTTCGGTCTGAATCCATATCTTTCTTGACCCCAAAGCCTGGCTCTTGAGTCAAACTGTCCTCTTTAAGGTCATTCCTTGATCCACCATCAGTGAGCGATGTGGTTTGGTGTTCAATCGGTTTGAGGCACGGCCTTCCTTCTGCCTCTGTGTCCCCAGGAAAGCCTTCGAGAGCTTGGTGCTGCGATTAGAAAGCAGATCCTCCATCCCCTGGTCCCAAAACCATCAACTCGGCCTCCACTGCTTTCCCGCCAGCCAGTGAGCCACACAAAGCTAACACATCGCAGTTGCTGAAATTATCACGGAAATAGCATTGAGCATTCATTTGTTTTTCTGTGTTGTTTGGAAGACTTGCTTCTGTTTATGCCAGAGCTAGGATCTCCCAGGCCCAAAGCCGAACGCTTTTGTGAGCACTGACATTTGTAGCTTTTGCCAAGTTCTCATTTATTTGTTCGTTCGTTCGTTTTTTTTTTCTTTTAGAGTTTCATAAACACATACCTATAATGTTCTTTCATCAAGCTTCCCATCACTATCCTTCTCGACTCCCCTCCCCCTCCCACTGAACCCCTCCCCGTCCCCAAGTCCACCCCCTATTTTCTTATCCATTTTTTTATGAACCGTCTTTAGTCGGGGTTGAGTGCATGAGTCAGTGGTTATACCTGAGCAAGGATAATGTGCCAATGGCTACACTGCTGAACATGATTCTCCCTCCCCACCCACCAGTAACCTTTAACTGCCTAGAGCTTTCTTGGGAGGGGCGGGGCTTTATGAACTCCTCCCCCATCCATGGCATGTTGATGAGCTCAGTGTCAAGCAGGTCTTGGGCTGGTAGCAGTGACTGGACCATGATCTATAATAGTCCCGATTTGAGTTCATAGGTGTAAAACGACCTCATCGTATCCAGAGACAGCGCTTTACAGCGCTCCTACCACCCTCCAGCCTTACGTTCTCTCCCTTTCCCACAGTGCTCCCTGAGCCTTGGCGGGGCATCTTAACTACTTCCCTACTGCTGTAACAAAGCACCATGGCTACGACAACTTATAAGGAAACCCCCAAGCCCACCCCCAGTGACACGCCTCCAACAAGGCCACACCTCCTCATCCTTCCCAAACAGTTCCACCAACTGGGGACCAAGCATTCAAATACGGGAGCCTATGGGAGCCATTCTCATTCGCACCATCACAAGGTGTGATGCTCGGGGCTGAGCACTCAGCAGATTCTTGTTCTCAGCACTTTAACCAGCTAGGAGCTCCCCTGTACCAGTGTTTGTATTGCACTAATGTTTGTATCTCGCCTGGGATGACAAGAACCTACATAGTTCTGGGAGACTTTGGGACCTCCTGACCACCAGCTCACAAGGAGGTACCTCAGACCTGGCACGGAGGTTTTGTTTAATAGCCATGGCCAAGGACTGCCCACAGTCCTTGTTTTTAACAGTACTGTTTAACTTGCTTACAACGTAATAGATTTTCCTAAAGCCTTTTCATATTCTCATTGAATTCCTTTTTTAGTTTCATGTTTATTGAACTACATGCTTGATAACACAGTGTCCCTTAACGTTTTGTGCATGCCATCTGATTTACAAGAATGTCGCTATGCCTTACATGTGAAACTTAAATTTTTACATGACGATATCCATAAGCCATGACTCAATTTAAGGTAAAAAAAAAAAAAAAGTCCTCCTCAGTTTTCATCAAGTTCTTAAGGAGATTCGGGGACCTGCTGTAAAGTGAAAGGATCATTAGTTCTGTATCTTTGGGGAAGGCAGAGCAAACAGGTTTCTACAAACCTGATGTCAAATAGACATTTATTTTGAGACAGCCTCACTATTAACCCTGGCTGCCTGGATCTCACTCCTTCTACCAGTTTGGCTTTGATCTCAGGTATCTGCCTGTCTCTATCTGCTAACTCCTGGGATTGCACGTATGCACCACCATGCCCAGCCACATGGGTATCTTTTGAACACCCTTCTTTGGGGAAGGCAGAGCAAACAGGTTTCTACAAACCTGATGTCAAATAGACATTTATTTTGAGACAGCCTCACTATTAACCCTGGCTGCCTGGATCTCACTCCTTCTACCAGTTTGGCTTTGATCTCAGGTATCTGCCTGTCTCTATCTGCTAACTCCTGGGATTGCACGTATGCACCACCATGCCCAGCCACATGGGTATCTTTTGAACACCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTCTATAAGTCTCAGAACTGTGGCATGAACTGTTTTGTTGAGATAGGACCCTTTGCACCCGGTTACCTACATCCCTTCATCCTGTGACTCCGGGTCCACAGGAGAGACCCTGGTCAGAGACTGGGATGCAGAGAGCTGTGCTCAGTAAGTGGTAAAGGAAATGTTCAATGTGAGTCAGAATCTGGTCATTTGCAAATGTTTTTCTGCTTAG
Seq C2 exon
CATGCTCTTGTGTCCATGGGAGATGTAGCCAAGGACCCTTGGGAGACGGCTCCTGTGACTGTGACGTCGGCTGGCGAGGAGTGAAGTGTGACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=45.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]