DreINT0157724 @ danRer10
Intron Retention
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9898004-9900432:-
Coord C1 exon
chr10:9900349-9900432
Coord A exon
chr10:9898216-9900348
Coord C2 exon
chr10:9898004-9898215
Length
2133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGTCCTCTTTCCCTTCCAGCAG
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTCTAGGGCTGAAGAGACCTTATGAAGATGGTCTGATGGATGACAAAGACCTCATCAAAAAGATGAAACGCAACCTGAGAAAAG
Seq A exon
GTAAGTCTGAATAATGATAGACTGATATAAAGGTCAGATTAATGATTTGGGATCTGCCATTTTGTGTGGTTAGGTTAAATAATTGTGTATTTGAATCCAAATAATATGGAAAAATTATGTGTGTCTTATTTGTTATCATTACATTGTTTTGTTAAGGTAACATTATTGTTGTTGTTTTTTAAGTGTCAGTCAGTTTAAATAGATTGTTCACCCAACAATTAACAATTACTCACGATCAAGTGGTTCCAAACCTTTGAATTTCTTTTTTTATTGTTGAACACAAAATAAGGTATAAAATAAGGTATAAATTAAAATTTTTGAATAATTTTCAAAAATGTTAGAGACCTGGAACTGTTGTCTTCCATAGTAGGAAAAACAAATCACTACAGGTTTTCAGCATTTTCCAAAATATCATCTTTTGCATTCAAAAAAACAAAGAAAATCAAATAGGTTCGTGACAAAAGGTGAGTAAACAATCACAATGTTTTCAGTTTTGGGTAAACTTTTTCTTTAAAAATGCATTTATGATGACAATCATCTTTTGTAAGCTGTTTGGACAAAACTATGTGCAGGTATAGTGTGTATAAACATAATAAGTGTCTTTTTTTTATTTCCTGATGTTAAAATAGGATCCAAATCCCTCCCATTTTGAGGCTCGCCTCAATGTAACGTAGGAGTGCGGTTTCTCTGCCCATCGAATTGATTGACAGCAGAGTATTAACATGTCTCCATAGTAACGCGTATAATCATATCAACAAGACAGGACGTGCGCAAAGCAACCTGGATTAAAAGATTTGTTCAGCTTACTGTGATCATCAGTCATCATCAAATGTGATCAAGAATGAGTTTTACAAGTTTGAAATGTTTTTAAAACAGAGCAAGTTTGTAATTAATTACAGTGATTTTACCGTCTTTACTTTATCACCACAGCCGCATGTCAGTACAATTATAAAAGAAGATGGTTAAATCCTTTGTGGACATCAAATCAGGTTTATTTTGTACATTAACATTACAGATATCCATACAGCAGTGGATGCTGTATCCTGTGTAATGTGTATCCTGTCACATTTGCTGTGCAAAAACAGTGCAAAGTGAAACGAGCGCTCTGTGTGCATGTGAACTTTGTAATGACATTGTGTGTGACTCATCATTGCAGAAAGGCTTGAATTAACCCCACAACAAAAACATCAAATAATCCTTCTTACTGTAGTATTTCTCACAAACATTATGTGAGATCTGCTTCCTTTATATCTGTTACTGTGATGTTTATGTGAAGGAGATTGAGGCACACTCTGACAGATGCAGAGGATGGTTGGCGGGGAGAACTAGCATTAAAGGCACAGGCCACAAAAACAGCTACATAGTGTTCAGAGCAGAAAATCCAATATTCTGAAAGCTATAATAAATAATCTGATGGGTGTTTTGAGCTGACACTTTACAGTACTTTCTGGAGACACAAAATACTTATCTTAAATTTTGAAAAAGGGGTAAAATAGGTGCCCTTTAATGCATTTAGTCAGTACTGTGTGCTGTCTTCTTTAAACAATATACTCCTCTGTATTAAGCCAATAAGGAAACGCTTCTACAGTAATCTACATCTGATCATTCTTTAATTCACCCCAGTTTGACTATAAAAGCTTTTCCCCTCTTTCTATACAGATCAAGTAACAATCTGATATTTTAAAAATCTTTTTATATATATATATGTCCCTGACTCTTTTTTTGTATTATTTAATTATTTATTTGGGCAGCATTGCGTCACAATATCTAATATCTTACCTGCTTTCTCTCAAGTAAACTGTTCAGATGTCACTCCACTCTTTTATTTGCCGCCGTTCCTATACTCTCCCGCTGTGCCTCCATCTCCCACTTTCACATACAGTACAGGAAGCAAACAGCCTTTGGGAAATCAATGCCATTGATTCTTAGTTTCTCTTGGAGCCGCGCTGCTGTCCCCAGCCTGTGCTCCTCGCCGGACTCAAATAAATGGCTTTCAAAGCAGCAGAATTCGGCAATTAGCTGGCTGATGGAACGAAGGGATAGCAAAAAGTCACACGATGAGCTGTGTATCTAAAGACTGCTTCCTTTTCGCCGTAATCACTGAGGTTTATTTCTGTCCTCTTTCCCTTCCAG
Seq C2 exon
CAGTTCTTGACAGTAAAGCAATAGACTCCAATCAGCCTATGAACGCTCTGATGCGCTTGAACCAGATCCGGCCGGGGCTGCAGTACAAACTGCTGTCTCAGTCAGGTCCGGTTCACGCCCCCGTCTTCACCATGTCCGTAGACGTCGACGGCACTGTTTACGAAGCCTCGGGATCCTCCAAGAAGACCGCCAAGTTGCACGTGGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455:ENSDART00000129151:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]