RnoINT0145339 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21859562-21860492:-
Coord C1 exon
chr3:21860400-21860492
Coord A exon
chr3:21859762-21860399
Coord C2 exon
chr3:21859562-21859761
Length
638 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
AATTTCTCTTTCTTTCATAGTTC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTGCCGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAA
Seq A exon
GTACGTAAATCCTTATTCTTATGGTGGGAACTGGAGAAGGTTTATAGCCTCAGAAAAATAAGAAAGGAAGAATTGTATTGACTTTGAATTTTAAGAATAGACCTTAGTCAACTAAATTGGCAATTGAAGGACTTCGAGCTTCTAAATTTCATTGCTTAAGATATCAATGCTGACAAATAGAAATTAATGTGACATTATTTTTACCAACCTATTATAATGTATAAAAAATTTAAAGATGATTTATAGATTGAATTTGTATTTGTTTTCTCATTTGTAAACACATGAGAAATGTAAAAACATTCTTTAGATTTGTTTATTTTATGTCTATGAATGTTTTACCTTCATGTATGTGTTTGTAACCTGTGCATGTTTGGTGCATGCAGAGATCAGAAGAAGGCCTCAGGTACCCTAGCAATGGAGTTAGAGATGTGATTAGCCTCCATGTGGATGCAGGGGACTGAAAGCAGACCTTTTGCAAGAGCAACAAGTGCTCTTAAGTGCTGATCCATCTTTTTAGATCATCACATAGGGAATTTATAGGGGTTAATAGGTTCAACAGATGTATAGCTTGAAGCAAAAGGCTTTCTAGTTTAATTTTAATCTTTCTAGTTTAATCTTAATTTCTCTTTCTTTCATAG
Seq C2 exon
TTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGATGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.5=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGTCTTCAGCTCTAAAG
R:
CACTGCCACATGAAGCTTTGC
Band lengths:
288-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]