MmuINT0154404 @ mm9
Intron Retention
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37458455-37459534:-
Coord C1 exon
chr2:37459442-37459534
Coord A exon
chr2:37458655-37459441
Coord C2 exon
chr2:37458455-37458654
Length
787 bp
Sequences
Splice sites
5' ss Seq
AAAGTTTGT
5' ss Score
1.93
3' ss Seq
AATTTCTCTTTCTTTCATAGTTC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTGCTGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTGGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAA
Seq A exon
GTTTGTAAATCTTTATTCTTATGGTGGGAAGTAGAGAAGGTTTATAGCTCAGAAAAAATAAGAAAGGAAGAATTGCATTGACTTTGAATTTTAAGAATAGACCTTAGTCAACAAAATTGGTAATTGAAGAACTTTGAACTTCTAAATTTCATTGCTTAAGACATCAATGCTGACAAATAGAAATTAATGTGATAGGCTGGAAAGATGGCTCAGCAGTTAAGGGCACTGACTGCTTTTCCAGAAGTCCTGAGTTTGATTCCCGGCAACCACATGGTGGCTCACAACCATCTGTAGTGAGATCTGATGCTTTCTTCTGGTGTGTCTGAAGACAGCTCCAATGTACTTATATATAATAAATCTTTGAAAAAAAAAACCTATTATAATGTATAAGAAATTTAAAGATTACTTTTGGATTGAATTTGTAATTGTTTTCTCATTTATACATGAGAAATGTAAAAACATTCTTTAGATTTGTTTATTTTATGTCTGAATATTTTACCTGTGTGTATGTATTTTTACCATGTGCATGCCTGGTACATGCAGAGATCAGAAGAAGGCCTCAGGTACTCTAGCAATGGAGTTACTGATGTGATAAGTCTCCATGTGGATGCTGGGGACTGAACTCAGATCTTCTGCAAGAGTAGTAAGTGCTCTTAAGTGCGGATCCATCTTTCTAGATGGATCACATGGGTAATTTATAGTAGTTAATAGAATCTACAAATGTATAGTTTGAAGCAAAATGGCTTTCTAGTTTTATTTTTAATCTTAATTTCTCTTTCTTTCATAG
Seq C2 exon
TTCTAGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCCGGGCTTCAGTATAAGCTTTTGTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCTGTAGATGTGGATGGCACAACATATGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-Strbp:NM_009261:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.5=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTTCAGCTCTAAAGAGG
R:
CACTGCCACATGAAGCTTTGC
Band lengths:
286-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: