DreINT0158010 @ danRer10
Intron Retention
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13788591-13788953:+
Coord C1 exon
chr21:13788591-13788640
Coord A exon
chr21:13788641-13788871
Coord C2 exon
chr21:13788872-13788953
Length
231 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATTGTTTTTCTCTCTGTAGGCT
3' ss Score
10.69
Exon sequences
Seq C1 exon
AGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGAGAATGGAAG
Seq A exon
GTAAGACAAACACATTCACACAAACACACATTCACAACATCACACTTCTAATCTTTCATCGAGTCCCAGGAAATATGTGTGAATAATTAAGCCCAAACTATTTCATCCATCCTGCCATGCCCGTTTTACACAGCATGCATATTTATTCCAGTGGCATATCTCCAAATAAATTCAAGTGTGTATCTGCACAAACTTAGTTTCTGAGTTTTCTAATTGTTTTTCTCTCTGTAG
Seq C2 exon
GCTTTGATAGTGGACCAGCTCAGCATGAGGATGTTGTCGTCCTGCTGCAAAATGACTGATATCATGACAGAGGGCATCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994:ENSDART00000015629:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]