HsaINT0161394 @ hg19
Intron Retention
Gene
ENSG00000136854 | STXBP1
Description
syntaxin binding protein 1 [Source:HGNC Symbol;Acc:11444]
Coordinates
chr9:130413882-130416075:+
Coord C1 exon
chr9:130413882-130413931
Coord A exon
chr9:130413932-130415993
Coord C2 exon
chr9:130415994-130416075
Length
2062 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTGTTCTCTTTCCTTGCAGGTG
3' ss Score
13.39
Exon sequences
Seq C1 exon
AGATTATGCATGATGTGATAAAGAAGGTCAAGAAGAAGGGGGAATGGAAG
Seq A exon
GTGAGTAGAAAGTACAGTTAATGGGCTTAAGGTGAGTTCACATGGAAAAATCAGAAGGGGATGGAGTTGGAGGAAAGTTGTAGGCAGGAATGAGGGCTTTTGCTGTGTCCAGAGAGTACAGAATGCTCCTGGATTGGAGAAAGGTGATCTGCTCTGCCTCACATTTCATATGGTCTTGGTTAAGAATTCTGTTTGTCATAAAGCTTATCTTAAAGACCACCTGGTCAGGCAGTTAGCAGTGGAACTCTTTTGTTCAAACAAAATATTACCTGGAACCCGTTAGATAAAGCAGAGGAAGGTATAATTCTGCTGGCTCTGGGAGAGGAAGAAGAGGCCCTCTTGCCCCTTTGTGGCCATAAAGCATCTCCATGGAGTCCATGTACAGTTTGGGCTCAAAGCCCTCATCTGGTCTATCCTCATTGAACTGTAACTACATAAGACAAAAATAGTAAGCTCGTTTAATCACGTAACATTGACAGGAGTGCTGGAAACTATAGTGTACTTGAAACAAGTATTTAAGCCAATCAAACTGAGAGTGGGCCGGGTTCCTGGAATGGGTGGTACAGGAGTGGCACCTGCTGCCCCCTATGCATGAAGTCAGCATTTTAAGGACTGCTTGGTTGTCTAAGGCTGAGAATTATACTGGCCAGAAGAGTGTGCAGTTTTACTTGATTTTTTCTGCATGTTGCTGAAGAATTTATACCAACCTTTCTTGCCATCAAGGTTTCCTGCAGTCAAAAGCCCATGCAGTTTCAAGTGCATTGGGCCTAGGAACAACAGAGCTGATTAGTACAGGAGGATTTTGAAGTCTCACCCGGGGCCTTTGTTTTAACCAGCACATCTGTCCTCGCCACCCAGAAGGGGAGGCCGTGCAGTGGGCCTCCCCACCGCATACCTTTAGCATACCTCTTTAGCATACCTTTCTCACTTACCCTTCCCATCAGTGACGGGCTTGTAGACATGTGAATTTTAAACTAATCTTGAGGAAGCTGCCTTATATAATAAAAACTAATTGACCCCTGTACTGCAGCAGAAAGCTTTCTCATCCACACTATCTGCCCTGATGTGTCTTCCTCCTGTTGCCCCCTTCTCAGTTTATAGCATTACAAAAAGAGAGGATAAATAGCCTTGTTTTAACTGCCAGCTTCCTCTCCACTGTGGGCTGAATGAAGATAAGAAAGGTTAGCTGAAGAGTTGCAGGTCTGAAGCTTTTAGGCCAGGACTGGAACGTTCTTGTTCTTCCAGCCTAGACTAAGGTACACTATGTCCCAGCTGACATGTGTGTTAGTGGCACAGTTCTGATGATGCTTTTCATCAAGTCCCCACATGCCAGACCACATGTGCAGGCGCTAGTGTTCACTCTCCCCTTAAACACAAGTGCATGCCGTGAAAAAGTACTCACTAATATGATTATGTCTGAATGTTGGAGCTATAGATGATATTTCCTTTATTTATTTATTTATTTATTTATTTATTTATTATTATTATTATTATTATTATGAGATGGGATCTTGCTGTTGCCCAGGCTGGAGTACAATGGCGCGATCTCGGCTCACTGCGACCTCCGTTTCCTGGGTTCAAACATTCTCCTGCCTCAGCCTCTCACGTAGCTGGGATTACAGGTGTGAGTCACCACACCTGGCTAATTTTTGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACCATGCCCGACTGATTTTTTTTCCTTTTTTAAATGGGTATTTACTTTGTCATGGGAAATAAAAACTATTTTTTTTTAAGTTTATAAAATTACATCAGTGAGAGGAAACTCTAACTCCTAGAAAGTTAGGTTAGGGTATGGGAGGTACAAGTGAGCATGTGTCCCCGTGGGCTTCTGGTCCATAGGAAATATGGTTTCTTCTGTATTCTGTACTTCTGGAGCTCCTTTTGGAGTCTGATGCGGTAAGCTGAGCGAGAATCACAGCAGATGCCATGAAGCCCATACGCTGTTCTCTTTCCTTGCAG
Seq C2 exon
GTGCTGGTGGTGGATCAGTTAAGCATGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGACCGAGGGCATAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136854-STXBP1:NM_003165:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF148471=Ras_bdg_2=FE(17.2=100),PF0099518=Sec1=PU(1.5=5.9)
A:
NA
C2:
PF148471=Ras_bdg_2=FE(29.0=100),PF0099518=Sec1=FE(40.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)