RnoINT0145626 @ rn6
Intron Retention
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11859266-11861027:-
Coord C1 exon
chr3:11860978-11861027
Coord A exon
chr3:11859348-11860977
Coord C2 exon
chr3:11859266-11859347
Length
1630 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AGCTGTCCTCTTCCTTCCAGGTG
3' ss Score
11.58
Exon sequences
Seq C1 exon
AGATCATGCATGATGTTATCAAGAAGGTGAAGAAGAAGGGCGAGTGGAAG
Seq A exon
GTAAGTAACGAGCAGCTCATGACCGACCCCAGAGGTGAGTTCATGTGTGAGAATAGCAGGGGCCGGAAGATGGCACAGCGGATAAAGTACGCGTGCTGTGCATGTGTAAGGACCAAGTTCTCGTCCCCACAGCCATTCAAGAATGTCTCACAGGATGGTGACCTGCTTGTGATGCCAGCACTCAGGAGGTCGAGGCTGGCTGGCGGGCTGGCAAGTGGCTGAATGCACCAGCAGGTTCAGTGAGTTCTGGGATCATCGAAGGCCTCAGCCCAGCAAACAAAGTGAGGGTTTTTGAGGAGGACACCTGACATCAGGGTGTGCATTCCCTCACACACACACACATGAGCATGTACATGCAAACATTCTCCCTAGCCAACACACACAAAAGAAGTTGGAGTTGGCAGCGAGGAGATAGAAATGAGTGTTTTCCCAGGCCCGAGGATGGCTTTGTGTATGAGCTTGGTCCAGAAATCTCTTCCCAGACATGGAGCGGGTGAGATGGCTCAGCAGGTAAAGGTCCTCTGAGGAAGGCGTCACTCTGGCCAGGAGCTAGTGGGACTCTTGGAACTTCCTCGCATGATGCTGAAGGGGCTACACTGTCCATTTGGAACTTCAGATTTCCCTGGAGTCAGGAACCCAGCCACATATGCCCAGGTTCATAGGGTGTGGGAGAAACTGGCAAAGAGGACTTTGGAGCCCAGTTCTGGCCCTGTGGGGTTCTGTTTCACTTCTCACAGGTTCTAGAGGGGAGGCCATCTGGCGGGAGCTCACTGTTCTGTCTCTTTAGGCAGGACTTTGTAGACACCAGAATTCCCAGCTGCCTCTGCAGAGGAGGCCAAGGGGCTGCCACAGAGCAGCAGAACCTTTCTGACCCGGCCATCCACTGCAAAGGCTTCCATGCACAGGGCTGTGAAGGAGAAGAAAAAGCCTTTTTACACCGTGGGCTTTTTCTCTCTACTGTGTGTGGATGAGAGGACATGGGGAAGATGAGGCGAACCCTGCAGGGTACAGCGTTCTCGCTCGTGTAGTCTGGGCAGAGTTGTGGGCTGGCGAAAGTAGAAATCCTGATGACAGCTGTGCTGAGCCCCATGAACCACCATGTGTGGACATGAGCCAGCCTCCCACGAGAGCAAGTCATGACCTGAAAATACCCAGAGCGGTGTCAGACATGATTCTCTCTTTTTTAAAAAAAATGATTTTTATTTTGTGTTCATTGGTGTTTTGCCTACCATGGATGTCTGTGTGAGGGCGTCAGAGCCTCTTACTGGAACTGGAGTTACAGACAGTTTTGAGCTGCCCTGTGGGTGCTGAAAATTGAATCTGGTACCTCTGACGGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCGATTCCCTCCTCTTTATTTCATTTTGTATAAATGCTTACAAGTATTTTCACAGGTTATGAAGTCAGGTGAGTGGGAGTAAGCACTATTGTCTGGAGGGTGAATTTGGAGGTAAAAGCTAGTGTGTGTTTGAGCATAGCTGCAGGCCAAAGGGAAGAGCTCCTCCCACATTCTACTTCCTGAGCATTCTCTTGGAAGCCAGTGAGAAAGGAAGGGCAGGGACTGCAGCCCTGAGCTGTCCTCTTCCTTCCAG
Seq C2 exon
GTGCTGGTGGTGGACCAGTTAAGCATGAGGATGCTGTCTTCCTGCTGCAAGATGACAGACATCATGACCGAGGGGATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420:ENSRNOT00000021178:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]