DreINT0158062 @ danRer10
Intron Retention
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1680164-1682880:+
Coord C1 exon
chr23:1680164-1680259
Coord A exon
chr23:1680260-1682794
Coord C2 exon
chr23:1682795-1682880
Length
2535 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATATTGGTGTGTGTTTCAGGAC
3' ss Score
10.32
Exon sequences
Seq C1 exon
TCAAACAGTTCTCGTAAAGTAGCTCGGAGAGACCGCTCGGAACAGGAGACGTATAATGTCTCTCGCTGGACACCCGTCATTAAAGACATAATGGAG
Seq A exon
GTGAGTAAAGCTCTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATACACGTGTATATATATATATATATATTATTTTTTAATAAAACTGCTCTTCATGTCATAATATTGTCTAGCTTGTCCTACTGTAAGCGATTAATACTACAATCCTAAATCAAAAAAGTTGGGACAGTGATTTCTAAATTGACTTTGACTTGCATTTCTTAATGAAAGTGTAGCCTGTGACTGTGTGGTCAGCGAGAGATGGTAATGTTTTCCCTGTCATGTGAAACTATCAATTTGTTGTTGTTACTGTAACACAAGCCTGATCAGTATTTCAGCTGAAGGCCAAAAGAGCAAGTGGTATTTCTTTAATTTTTTGTCAAACTGTCTCTGAGCCAGCGGCCGTTCATATTGTTTGGCCCTTATATATAATAAAGCATGGTATGTTCTTACAATGACAATGTATAGTCCATCGCACACATGCATTGTCCAGCGATGAGGCCACTGTTATTCCTGCTATTGAGTGTCAGATCAGATGTCCTGCTTTCAGAAATGATGAATCCACACCCTCTTGTTTCCTTGTTCGCTTTGAAAAGCACATCGGCACCATTAAAAAGCCTCTGGTTAGAAACTCATGTGTTGATATTCTTCCTCTTCTAGCTAAATAAGCTTTGCGCATTGAGATTTGGACTTTTACTATAGCATTAATAAATATTTTATCTAACAAAGATTGTTTAAGAGAGATAAAAGTAGCATAGAGCGCCGTCTGCTGTTAAACACTAGCCTAAAGTAGTCTTCTGTTTAAAACTAGCCTAGAGCGCCGTCTGCTGTTATACTAGCCTAGAACGCCGTCTGTTGTTATAAACTAGCCTAAAGCGCCATCTGCTGTTAAAAATTAGCATAAAGCACCATCTGCTGTTAAAAACTAGCCTAGAGCGCCATCTGCTGTTAAATATCAGCCTAGAGTGCAATCTGCTGTTATAATCTAGCCTAGAGCACGACATCTGCTGTTATAAACTAGCCTAGAGTGCCATCTGCTGTTATAAACTAGCCTAGAGCGCCATCTGCTGTTATAAACTAGCCTAGAGCGCCATCTGCTGTTATAATCTAGCCTAGAGCACGACATCTGCTGTTATAAACTAGCCTAGAGTGCCATCTGCTGTTATAAACTAGCCTAGAGCGCCATCTGCTGTTATATACTAGCATAGAGCACGACATCTGCTGTTATAATCTAGCCTAGAGCATGACATCTGCTGTTATAAACTAGCCTAGAGCGCCATCTGCTGTTATAAACTAGCCTAGACACCATCTGCTGTTATAAACTAGCATAGAGCACGACATCTGCTGTTATAAACTAGCCTAGAGCACCATCTGCTGCGCCATCTGCTGTTTAAAACTAGCCTAGAGCGCCGTCTGCTGTTAAATACTAGCCTAGAGCGCCGTCTGCTGTTAAATACTAGCCTAGAGCGCTGTCTGCTGTTTAAAACTAGCCTAGAGCGCCGTCTGCTGTTAAATACTAGCCTAGAGCGCCGTCTGCTATTAAATACTAGCCTAGAGCGCCGTCTGCTGTTAAATACTAGCCTAGAGCGCCGTCTGCTGTTTAAAACTAGCCTAGAGCGCCATCTGCTGTTGAATACTAGCCTAGAGCGCCGTCTGCTGTTTAAAACTAGCCTAGAGCACCATCTGCTGTTATAAACTAGCCTAGAGCACCATCTGCTGCGCCATCTGCTGTTTAAAACTAGCCTAGAGCACTGTCTGCTGTTAAATACTAGCCTAGAGCGCCGTCTGCTGTTATAAACTAGCCAAGAGTGCCGTCTGCTGTTTAAAATAAAGTTCAGAATGGATTTTTGGCATGGTTTTTTTGAGCACAGCTCTATTAAAAATGTATCCAAATGATTCAAGCAATGTAATTCAAGACTTCTGAAGAGACACGCTTGTTTGGTTCACCAGGTGATTTTGAAAATAAATTCTGCTGTATTTTCAGTGTCAGGCATTAGTGAGAAGAGGTGAAACAAAAAAAGACGTGTATTATAGTGCTGTCACTATCGGTACTGAGATTTTAAAAGCGTCCATTTCCCCCTAACATTTGAGGGAGTTCTTAAACAGCACTGATTTGCCATTGTGTTCACATGCTCAACAGAAATGGCTGTGATTGGCCGTGTAGGTCATCAGTTCACCAAACTCACCGCTGTTTACTAAGTGTAATCACAGATACAGGGAAACTGGAGCGTTTTAAAACCGTGATTCATCGGCAGATCACTCGTATGTCGGCTTATAGATGAACCAGCTGATCGACGTGTCTTTAAAACTCTTTCACAGCCAATCAGAGTCATTTCTGTTGAGTATGTGAACACAATGGCAAATAAGCGCTGTTAAAGAACATGCTCAACAGCGCTCAAATGTTAGCAGGAAATTAACCTTTTTAAAATTTTAATACCGAATTCCAGTATCGTGACAACCCGACTACATTACATTTTGATCATCATCAGTTATATATATTGGTGTGTGTTTCAG
Seq C2 exon
GACGCAGTGGAAAATAAACTGGATATCAAAGACTGGCCGTTTCAGTCTGAATGTCCGTCTGCGTGGAACGGCTCTCGGGCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142:ENSDART00000044776:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.7=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]