DreINT0160165 @ danRer10
Intron Retention
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22663725-22664037:+
Coord C1 exon
chr3:22663725-22663818
Coord A exon
chr3:22663819-22663903
Coord C2 exon
chr3:22663904-22664037
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TATGTCTATCTGTATGTCAGCTC
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATTGTATCATACCTACTCGACCTGCCTGAGAAAGATGAGGAAGAGGAGGAACGAGCTCAAATAAACAACTTTGATACATTGTGGGGTGAAACAG
Seq A exon
GTACAACACTACATACTGTATATTCCATTAAATCTGTGAGTGCAGAGATTACTCACTTAGGAGACTATGTCTATCTGTATGTCAG
Seq C2 exon
CTCTGACAGCTGCAGCGGGTCGGGGAAAGCTGGATGTTTGTCGTCTTCTACTGGAGCAGGGGGCCGCTGTGGCTCAGCCCAACCGCAGGGGCATCGTGCCGCTCTTCAGCGCTGTTCGGCAGGGACACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097:ENSDART00000112270:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(28.2=100)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=60.0),PF127962=Ank_2=PU(10.8=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGGAGGAACGAGCTC
R:
CCGAACAGCGCTGAAGAGC
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]