GgaINT0143987 @ galGal3
Intron Retention
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2528414-2532800:+
Coord C1 exon
chr27:2528414-2528507
Coord A exon
chr27:2528508-2532666
Coord C2 exon
chr27:2532667-2532800
Length
4159 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
ACTGCCTCCTCTCTCCCCAGCGC
3' ss Score
11.91
Exon sequences
Seq C1 exon
ATTGTCTCCTACCTGCTCGACCTTCCAGAAAAAGATGAGGAGGAGGTGGAGCGAGCTCAGATCAACAGCTTTGACAGCCTCTGGGGAGAGACAG
Seq A exon
GTGATTCCTGCAGATCCGTAGCTTGTCCTGCATGCTTGTGTTGGTATTTACGGGCTCCTGGTACACCCCTGATCCCTGCTTTGCTCTGACGGAGAGGATCCCTTCCTCTGATTTCACTTCGGGTGATATACATGTGCCAAGCTGCTTGAGTAGACAGTTGGGCTTTGGGAAATCCTGAGCTTCTGCAGCTCCTGCTGCTGGCGTGAAGCGTGGGGCACACAGCAGCTCTGACTGCCAGCCCACTGGTTTGAGAAACATCCCACATTAAGTCAGATGGATGCACACTGCTGCCCGTTCCCTCTTGATACTTGGCATATTTACTCAAAGCACCTCCATTCTGCTCTCCCCTTGGCTGTAACACGCAGCACTGATTGCTAAGCTATCCATTATTTAACACCAGCTAGTTAAGAAGAAGTCCTCTGCGCCGTGCTCTTCTCGGTGCTCACAGTCTGACACAGAAGCCCTCCTTTTCTCACTGCCCCCAGAACAAAACCAGCCATCCCCCCTTTCCTCCTCACACACACACAAGTCACGCTGCCATCTCCATTTCTTGAGCTTTTCAAACTTGGCCCTGCTGGCTTTTGACTCCGGTGACCTCTTAAATATTACCCGCTGTCTCCTGCACTCAGGTCACCAATCCACTTGCATCAGTGCTCCTGTCAAGCTGATGCACTGCGGTGCGGTCCCTGTCTGGGTGAGAGCTCTGCCTTCAACTCCATCGGCTCTGTTTAACAGTGACATGCTTTGGGCTGCAGGCACTGCTGTGCTGGGCTCAGGTTGGCTGCAGTTCAGGCAGGGAAGGGCTGGGTTGTGGTCTGAGCTGACTGGGACTTGGTACTTGTGAAAGTACAGTGCTGGAATGGATGGAGCTTGCTGGGAAGTATTGCCTTTAAATGGCAGAGGGAGAGGAGTGAGGTGTCCCAGCATGGAGTGGAGCACAGGGAAAAGCAGCAGCTCACTGCACACACAGCCACACAGCAGCAAGGGCATGTTGTCTTTATTGGTGGAAACAGTGCCACAAATGTACAAATAAACCATTTAAAAGTGCCCCCAGGGCATCACAGAGCAAAAAAAAAAAAGAAATTGGATATAGGATTCTTCAAGTGAAATGATGGAGTGTTGGCAGTTGGTAACAAAACAGTGGCATTTTTATAGGTGAGCCAATTTGTAACCCCAGGTCAGAGATGGCTCATCCAGAATGTGCACTGCTGAGCAATGGTCCTGCTGCAGAAGGGTAGCAGATAGAAGGTGGTCCAGATGGCTTCAGAGTTTGGTTTGAAGTGATGGAGATGTGTCCCTGCAGTGTGTCCTCAGAAGCAGCATTGGGCAATGGAGATGCTCTTCTTGGGTTAGGATAGCCCTGGTTGTCTGGATAAGCTGGGAAAGCCTGGTGGAGAGCCCTGCAGCTTTCCCAGCTGTTCTGTGGCCCTGCTCTTCCCTGCAGCTCCACCTCTGCAGCTCACAGCCATCCCATTCCTCCTCTCTTTCTGCTCCCAGTGCTTTGCTGCATGCTCTTCTCCCTGCAAAATCCCAGCTCTTCTCTTCCCTCACATCTGGGTGGCTCTGCTGTTCCCAGTCTGCCTGCTGCCCCAATGCCAAAAGCTGCACTCACATCTAGAAGGGATGGCTGGCAGCGCAGACTGCTGATGTGCAAACAGCACACAAACTGGGAGGCTGTTAGAAATGAATCCCCACTTATCCATTACAACAGCTGTGGGTAAGGTAGGAAAAGGAGCAAAACTGAGCCAAGCACCAAAGGCAGCAGTGCCTCCTTCCATCACAGGTAAGATGTGTTCCTATGGATCTCCAGATTCCCTTGCACGTTGTTCTGTTTTTATTTCCCCAACAGTAAAAGGGAATTTAGTTTGCACTTGAAGGGAAAACACTCATTTCCACCTAAAAATAGCAGCCTGCTCTAAAAATCCGAGTGGGGTCTTCTCTCTCTTCTGGTCCTTGTTGCTCGTGTGTCTGATGTGCCGTAGAACAAAGCCTGGCTCAGTGATGTCAGCCTGATCTCATCCCACGCAGCGCCAAGTTACGTCATGAGGTCAGGAATTGCTGACAGCACAACTCCAGATGGATCGCGTGCCCCCGGGACGGGGCTCCCATCATACCCAGCACAAAAGCATCTGAGTCACTTGTAACAGCTCCACCAGGGCTGGAGGTGCAAGAGCAGCAATACCGCCTGTGTGTGTCCTGCTGCCAGCCCCTGAAACGGATCCACAGCGCACTGCGATGTAATGATCCCTTCTGCAGGTCAACTTTGTTCCTCTGTAGGAAAGCAGCACGCTTTGCACAGCAGGCACTGTGCTGCAGCACATCCCTTCTGCCGGAGAGCCGACGTCCTCGTGATGGAGGGCGGATGGAGTCAGTTTGGGTTTTGCTGGCTGTGTTTTGGGAACTGCAGCAACTGTTTCATGGCATCTATGCCAAGGTTTGGTTATTGCAGGTTGTGATAGCATGGCATTCCGTTCTCCTGGAAGAGCTGCAGTGTAAACTCTCCCATTTTCCAGCTCCAGTCTCCTCTTGCTGGCTGGGCTCATTGGGCTCAGTTCTTCACACCAAGCCATCAGCTCTCAGGCAGCAAAACTTCCAACCAAACCATTTCTCTCATTTCCTCTCATCTCCTTTCCCGGCCCTTTGCAGTCTTCATGCAGCAGAGTGGAAGTTGCGGGGATCAGTGGTGGCTCCTGCAGGCACATCAGAGTGCATGGGGATGTCAGCAGGTGGATGCATGCACCTGAGGAGTGCTAAAAGCTTATGGAAGTGGGTGCTTGCAGGAGGCTTCCCGAGGTGGTTTAATTGAGCTTTGGAACTGGGATGGTTGAACTGCTGCCACAGCACTGCAGGATGGGGGAGTCCAGCAGAGCAGAGCTGAGGAGGGTATGGCTACAGATCCAATTGTCCTGTTCCAGTGAAGTCTCTTCCAAAGTCTGTTCTGTGATGAGCACAGACTGTGTAGCTGCTTTACATAAACCATTTTGACGTGAAATACCTGAAATTAACCCACAGCATTTCAAGTGCAGGCAGGTTTAGAAATAGAACCCCAAAGCCCCGCGTGCTGATGGCTGTGCCATGCACATTGCTCACACTCCTGCTATATTGGTAGCTTACGTTTAAAACCCACATGGATCTGATTATAGATGTTGCAGTATGTTCTGCTCGTGGTATAGGGATGATTTTTCTTTTAACTCTTGCTGTCTCTCAACTCCGAGCGAAGAAAACTCGAGCAGAATGTGGAACAGAAGACAGAATTAATTAAATCCCCCACCATTAACGGTGATGCAGTTGGAAACCCATCAACACCTCGTAATCAGCCGTCCCACAGAAATGTACTTCAGAGAAAAAAACAAGCGACGTCAGTTTGAAACAGACTCCCACCTTCTGCTCCAGCTCCCACCGGAGGCAGTGCTGAAGTGTACAGAGAGTGGGGGGGGGAGAGGGAGGAACTGAAAAGTCTAAAATTAATACCAAAGACGAGGCAAAGGCAGGTCCTGCACTCGGAGCTATTTGCAGGTTGGATGTGTCTTTCTGAACCCAGCCTGACTTCTTGGGTTGGCAGAGCAGAGTTGGACAGGGGAGGAGATATCAGCTGTTTCTTCCCAGCCCACTGAAGCTGAGAGACCATAGAATCATAGAACCATAGAATGGCCTGGGTTGAAAAGGAGCACAAAGCTCATCCAGTTCCAACCCCCTGCTATGTGCAGGGTCGCCAACCAGCAGACCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTGCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTGCCAGTGTGAGATGGTTTGGTTTTTGCACAAAGACCGTTGCAGGTGGGGTCGGTCCTGCCCAGAAGGAGCAGCCAAAATGAGCGTTTTGCATGGAGAACATCTGAGTGCATAGACACCACTTTTGCTTTCCAGTTACTCCGGAGATCCGCAGGCTGACATAAAAAATCCCCCATCCCAACAACGCTGGTGTGGGTTCATTCCAACAGAGGAGAGCCCAGAGCTCTCCGCCTTCCTGCCAGGAAGCTGTCCCTGATCCGTCCCCCATCCTTGGTTGGCGCTGCCCATTGGGGGCTGTGGTTGGGGCACCATGGAGCCATCGTGGCTGCTCCCCTCACTGCCTCCTCTCTCCCCAG
Seq C2 exon
CGCTGACGGCGGCGGCGGGCCGGGGGAAGCTGGACGTGTGCCGGCTGCTGCTGGAGCAGGGAGCTGCCGTGGCACAGCCCAACCGGCGCGGCGTGGTGCCACTCTTCAGTGCCGTCCGGCAGGGCCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478:ENSGALT00000000648:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=FE(50.0=100)
A:
NA
C2:
PF136371=Ank_4=PD(27.4=37.8),PF127962=Ank_2=PU(10.8=22.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]