DreINT0163244 @ danRer10
Intron Retention
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49129357-49129684:+
Coord C1 exon
chr17:49129357-49129438
Coord A exon
chr17:49129439-49129529
Coord C2 exon
chr17:49129530-49129684
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTATGTTGTGTCATTTGCAGCAC
3' ss Score
10.05
Exon sequences
Seq C1 exon
ACACAGACTGCCTCTGGGAGCTGATTCACACCAAATCACAAAAGGAGGGCAGGCCTGAGACGGTGTTCCAGTTGTGCAGCAG
Seq A exon
GTAGGAGTTACCTACTTGGTCTTTTCAAAAATGAAGTGTCCCATTTTATTCCATATAGAGCTTACCATTTTTTATGTTGTGTCATTTGCAG
Seq C2 exon
CACACCAGAGTGCAAAGTGAATATCATCAAGGTGATGCGCTCCATCTTGCGGGAGAACCTGCGTCGAAACATGCAAAGGGTTGAACAGTCTGAGAGAACCTGTAAAAAGCGGCTTACTCCCCTTCGGAAAAGCCTGCCAGCTTCGGCTAGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780:ENSDART00000156492:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACAAAAGGAGGGCAGGC
R:
GGGGAGTAAGCCGCTTTTTACA
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]