GgaINT0085351 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52490299-52491115:+
Coord C1 exon
chr3:52490299-52490392
Coord A exon
chr3:52490393-52490960
Coord C2 exon
chr3:52490961-52491115
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGTTCTCTTAAACTTGCAGCGA
3' ss Score
9.67
Exon sequences
Seq C1 exon
GCACAGGAACAGAGAACAGCTGTATCTGGGAACTGATTCACACAAAGTCAGAACTGGAAGGCAGGCCAGAAACCATTTTTCAGTTATGCAGCAG
Seq A exon
GTAAGCTTTTGATGGAAGCTGGATGAATTACATTAATGAAACAAAAAAAAAGTACAAGATCCCTCCACCCTGTGATCTTTATATCAGCACTTCTAAAGCTGTTATCAGTCTTTAAATCCAGGCACTACGCCACTGTTTAACTGTGTAAGATATACCAGATATAACAGTTTGAAACTACGCTGAACTTGATGCAGTGATACAGTGGAAATCTGCACAGGTGTAGTATCATAAATTCCAGCATGATAGGGGCAGACTAATTTTACCAGACTCTTGGTTGGTTAGCAGAAATTGCCTACCCCTAATCTGATAACACCGCTCAAGGGTAATGCTTGGGTACCTAAAGTCTCTTTCAGGCTGTTTTTCTAAAGGAAGCAAGAAAGATCTCAAAACACAAGAGCGTGTTTTGTGTTTAACAACACAGAACAATGTTAACTGCCAAACTAAGGAAAGTGACTGAAAAAAAACCACTGCGCTAAAGCACATCAACAGAAAGCAGGAGGTTGAATTTGATTTCAGCTGTCTTTCTTCAGATGTGAAAATTAGATTACCTGTTCTCTTAAACTTGCAG
Seq C2 exon
CGACTGCGAGAACAAGACTAACATCGTGAAGGTGATCCGTTCTATCTTGCGGGAGAATTTCAGACGTCACATAAAATGTGAGCTGCCTCTGGACAAAACCTGTAAAGATCGCCTCATTCCACTGAAGAACCGTGTGCCTGCGACAGCTAAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGAACAGAGAACAGCT
R:
AGTTTAGCTGTCGCAGGCAC
Band lengths:
247-815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]