MmuINT0160131 @ mm9
Intron Retention
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3515970-3516717:+
Coord C1 exon
chr17:3515970-3516057
Coord A exon
chr17:3516058-3516562
Coord C2 exon
chr17:3516563-3516717
Length
505 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TCTTCCTTTTCTTCCCTCAGTGA
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGACTGAAAATAATTCCACGTGGGAGCTGATTCATACCAAGTCGGAAATTGAAGGACGGCCAGAAACCATCTTTCAACTGTGCTGCAG
Seq A exon
GTACTTCCCTTGACACACCATGTAAGACTTCATTGTGTCCCTTTAAAGGGGAGGTAAGGTGCTGAAGAGATAGCTACGAAGCTAGAAGCACTTGATGCTTTTCCGCAGGACTTGGGATTGGTCCCCAGCACCCATGTTTTGTGGCTTACAACCACTTGTAACTCAAGCTCTGTGGGCTCTGACAACCTCTGGTCTGTTCAGTGACAACCCCACCCCCCCCAACAAGGAGTACACATATACACACAATTACACATAAGTAAATTAAAAAAAAACAAAACCTGTTTGTGGGGGTATGTTTTTGGTGCCCTCCTAAATTTTGGTATGAGGGCACAGCTTCACCTTAAGAAGAGCAGCTGACATACTTTAAGTCAGAAAAGTCAGGCACATATTGGTGGGGTAAGTTGCTAGCTTCTGAAGGGGGAGGCAGAGCTGGACAGGGCTTTACCCCTAGGAAGGTCCACAAAGAAGCGGAAAGACAGTCATCCTCTTCCTTTTCTTCCCTCAG
Seq C2 exon
TGACAGCGAGAACAAAACCAGCATTGTTAAGGTGATTCGTTCTATTCTGAGAGAGAACTTCCGGCGCCACATAAAGTGTGAGCTGCCACTGGAGAAGACGTGTAAGGACCGGCTAGTACCTCTTAAGAACCGAGTTCCTGTTTCAGCCAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-Tiam2:NM_011878:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGAAAATAATTCCACGTGGG
R:
TTGGCTGAAACAGGAACTCGG
Band lengths:
238-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: