DreINT0166084 @ danRer10
Intron Retention
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35431113-35436615:+
Coord C1 exon
chr2:35431113-35431263
Coord A exon
chr2:35431264-35436345
Coord C2 exon
chr2:35436346-35436615
Length
5082 bp
Sequences
Splice sites
5' ss Seq
CACGTATGC
5' ss Score
4.23
3' ss Seq
GTTTGTTTGTTTTTCTCAAGTGA
3' ss Score
4.99
Exon sequences
Seq C1 exon
GACAATGATGGAGGGATGACAGCACAGCTACCCAGTACCATCACATCTTTCCACCAAACGGGACTGAAGCCTGGAGAAGAATACACTGTCAACCTGGTGGCCCTGAAAGACCAAGGCAGGAGCCTGCCTGTTACCGCAACTGTTACCACAC
Seq A exon
GTATGCCTCTCACTCATTTACATCACTTTTATGCAGTTGGCAGACTTTTATTCCAAGCGATTTAAAGTGCATTTAAGTACTATGCTTATGAGGACATGCTGTATGTGTATGTGTGTTTCCCTGAAAATCAAATCTGCGACCTTGGTCATTGTTAGCGCCATGCTCCACCAGCCAATCTATAGAACACCCACGCCTCACTGTTTCGTTCTCCAATAACTGCGCTGCGTTTTTCTTGAGCTTTCTGTATATAGCTTTGATTTTTAATGACCTACAGTACCACAATTGTTCGGTTCATGCATTTACCCTACACTTTCACTATATTTTAAGTCAATAAGTTTTGTGTAAGAATCCATACTGTGGCTTAAGCACTTTGTAGTTGTTTGTTAATTGTTTTTAAGGAACTTTCATCTCTGCTTCATGGAGATAAAACTAATTCATTCTAATGAATTCTCTGGAAATACCACTCTTTATATTGTATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATAGTATATTATATTATAGTATAGTATATTATATTATATTATATATTATATTATAGTATATTATATTACAGTATATTATATTTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTACATTATATATTATATTATATTATATCATATTATTATATTATGTAGCATCTTTTTTAGTATTGACTGATACTTTCGACATCCCTGGTATTTTCAAATATTCATGTTTTGTGATAGGCAGCATAGATACTCTGTGTCGAATGGCAGAACAGGATGCTTCGTCGTTGAATGAGACATAAAAGTTTGCAAAGCAAGCAAATGCTCTTCGGGCGGATGCACAGTGCAGAAGGAAAAAGGTTACGTTTGTTTTCTGTTGTGCTGAGAAGATGAAAGAGAGAAGAATGTGAAGTGCTTTTCCCTTCGGGTTACTCAGCCAGCTGAGTCACTAGTGTCTCTTTTGTAGCTGTAGTTGACAAGTTGGAAGTGGCTTGAGCAGTGATTTCCTCCACCCATCTGCCATGTCCTGTTGTTTCCCCCCTGTCCTTGGTGCTGAAATCAGTGTAGCACAACTGTAAGGTTGAACTGAGGGCTCACCTTCCAACTGCACTATGAAATGTTGTCAGAAGAAAACACTATTGCAGATATGTCAGACTAAACATGCAGAAAAACATGCATTCAGTGATATAATGCCCTCACAATGGAGGGTGTGTAAACAGACCTCTTGAAATAGTGTGTGATAGGGGCTGGGCTGGAAAGGCATAAGCTGCAAGGAGGTGTCACATTGCTTTAGCTAATGGAAAATGTCACCATGATGAATGGGTGAGTCTACCAGCAATTATGCACTTAATGTAAACTTCACCCAAGAATTCTTCTTCTGTCACTTACAGACAGGAGGATTAGATTCAATTGAACTTTTCGTGGACAATTGAAATTGCATGTCTGCTGTGAAATCGCCATTAATTTCTACGGGCCTCACTGCTGAGCATAATTAAAGAGGCATTAATTATGCATTCGAGTCCATTAATATTTCACGCATCCACTGTGGATACCTTATTGGATAAAGAAAGACAAATTTGATGTCACTTAATTATTTATGTGTGCAAAGATTTATCTATCCCCGGAGAAAGCCCGGGAAGAGGAGCTTTTCGCTAAGCACGGCCTCGCCGCCTTGTGAGTTTGCAAGTTGTCTCACGGTAATTATGCTTAAGCGCTAAAATTCAACATTTTCAGGAGAAAAAAATAAACAGTAATCTCCCGCCTGGTTTCTGGTGTGACTAGATTTAAAATGAGACCATGCTGCTGTGCCTTGAATAAGACCAAGCAGTCGCCCTTGTGGATTGAATAGGCTGAGTGGAGAACTTAAGGTAAATATTCCCTTGAACCTGCCGTGACATAATTTCCTCATTTACTCGAGCTTCCTCCTGAACTTTCATGTTTGATTAACGGGTCACATTATGTAGCTGTAATACCCTTAAGAGAGACACAATTGCACCATGCTCGGTGTATGTTTTGGGCTCATCCTTGAAATGGGAAATGTGGGATTCGCCGCAGTGTCACCTGGTCCAATTAGTAGCCTTTTTTTTTTACATATCACAGCAGAATGAGGACAAGGATGGAGATGAGCTGAACTTCCGAGGTCAAAACACCATCTTCATTCACAATACCTGTTTCTGAGGCAGATGGTCAGGTTGCCCTTTATAAAGGAGGAGGTTAATTATTCACACAACCAGTTAGCGTCTTATTAAAAGATCCTGTGGGAGACTCAGCACGACCACTTGAATCAGTCTCTTGAGTCTGGGCTTTGCTGTCGGAATGCCTGCTGTCAATAACTGGCGAATATTTTCTCATTTACTGTACTTGAAGTTCAAGAAAAGCCTGCTCATTGGACCCTCTGGCACCTATTTCAGGTATCCAAGACCGATTCCTATTTGGTTGTATGGAAAAATCTTGCTTTGGAAGGTAGCACTTTTTCCAGTATATTGTGAGTTTTAGTATAGTACAATATATTATAGTATATTTTTGCCAAGCAGCTGTTATAGATACAGGCAGGGCAGAAGATGCAGTTTCTGGAAAGTTGTTTGAAAAAAAAAAAAAAAGACTGTTATTTTTGCAATTTCATTGGTACTTTTTGTGACACATAAATTACACACCTCACCTTTAAATCTCAGGCGCAGTCACAGTTCAGTATATTTAAAGTTCAAGCTTAACTTGCAAATTCAGCGTTATCAGGTTCTGCACAGTCCTACAACTTTGAGCTTCCCCTTTTTTTGAAAACAAGTTTTTCCACCACTTTTTGACCTTGCATCGTTACCTTGGTGGTATTCTAATGATGTGACAAAGGTAAATTTAGCAAAATAAAAAGTCCTTTTTGTGGACATGTTGACAATGCATTCTGTTTTATACTGTAGCTCAGGGTTTGGTTGTTGTATTGAGGGGAAAGTGTGAACAAATTAGCTTGTATCTAATTGTACAGAAAGGGATTTTGTATGTGCATCAATCATCACAGAATTTAATCATCTACACTGTCATGTTCTCTATTTTTTCTATTTCTATTACTCAAATCATCAACTAAACACCCTGGGCACAATTTGCTGATAACAAAACTACCATGTTAGAGAAGGGTTTTTAAAACTCGGACTCAAGTGCCTCCAATTGTGCAACATTTGTAGTGCTTTAGTGTTTTTCTTCATTGGTAACTGCATTTATATTATAAGATATAAATATAGTAGATGTATTGTTACATACTTTTAGATGTTAATATTAAACTAAGGGTTTCTGACATATAATAGTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAAATGGATGGAGAAAAAACGACTGAAAACTAAATATCACTGCAATTGATTATTAATTGCCCATACTTTCAGTGAAACCATTGAAAATATATTGTACATTGAAAGAAAAATGTTTACAATAAATAAATGATAAATTATCTGTTGAAGAGGAGGTAGTTAGAGGTGCGTAAATCAAAGAAAGAAATATAACAAAACACAATAACTGTATTAAACAAACTATACTAACTATCAACAGAAAAGTATGAAAAGAAACATCTTTAACGTACCAAACGTCTTATCTAAACTACTCTAACTAAATAAACAAAACATACACAAAACAGCACACTCTCCGGAACCTAGTGAAATAATACAAAAATGAATCTCTGTGTTGTATATGTGTATCACGTGGCTTGCTCATTTCTGCACCCTCTCTGAGAAATCACTCAAACAGGTATCAGTTAGCTGGACAAGTTCACATGCAAACACATTGCAATTTTCAATCTCAAAAGATTTAGATAAGAGCAATAAATCACAAGCAAAATGAAAACACAGTCTCTCAGACTAGTCCTTGCAACGTCCAACATCACCAGCACAAAATGCGAATCCTCCAATCCTGTGTACCTGTTTCACATGGGTAAAACGCCACACCCACATACAAACAAGCGCACAAACATATACCCAAAGTACTTTTTGCAAGCGAACGTAACATATTATTAAAAATTATTAATCAGCCGTCAGCTAGCTCTCTGCACATCTCACATGGTCGCCCTCTGAAGCTAAGCAGTGTTGCATCCGGTCAGTACCTGGATTGAACACCACATGGGAAAGCGAGGTTGCTGCCAGAAGTGGTGTTAGTGAGGCCAACAGGGGGTGCATAACCTGCGGTCTCTGTGGATCCTAACACCCCAGTATAGTGAAGGGGACTCTAACTAAGACGTTAAACTAAGGTCCTGACTCTCTGTGGTCATTAAAAATCCCAGGAGTATCCATAGATGTAAGGTATTATATTATTAGATATATTATATTTATTAGATCTTGAAATGTTTTATATGTATACTACAAAAGTGTTGAAAGCTTGATTCTAGTTGGTTGACAAGCATCAGTGATTTCAAAGGTCTTTATAGAGTAAAACAGTTATTAAGACTTTGATCGAACATACAAATGTAATAAACAATAAGCACAAAATAGCAAATGATTTATTTTCCTCTTTTAAATTGCACTGACTAACGTGAAGTCACACACACGCACAGTAAAACATTTAGAATAAATAAATAAATAAACGAAAAAGAAAAAAACAAATAAATGAAACCCTTTTCAGTAGCAAAGTGGTAAATGTAATCTTCTTTCAGTAACTAAACAAGCAGTTCTGCTATTATTGGATTATTATTCCTTACTTAAACTTTACATGTCAGGATGGGTTTTCAGCCATGAGTCTGTGGACCCCTGGGTATCCATAAAAGCACCACAGGGGTCCACAGAATCATGGCTGAAAACCTTTCAAGCATACTGGAGTGTACTTTTTTCACATCACTGATGCTGTCTTATGTTTTTTTTGTTTGTTTGTTTTTCTCAAG
Seq C2 exon
TGATTGATGGGCCAATACAGCTTATTGTGCGAGACATCTCAGACACGGTTGCGTTTGTGGAGTGGAGCCCACCCAAGGCTAAAGTGGACCAGATTATACTGCGTTATGGGCTGGTAGGGGTAGAAGGGCCAAAAACCACCTTTCGCCTTCAGCCTACTCTGAGCCAGTACTCACTCCAAGTCCTGAGGCCGGGATCTACATATGAAGTATCAGTCAGTGGAGTCCGCAATGGCACTGAGAGTGGAGTTATTTCAACAGAATTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771:ENSDART00000015827:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(52.5=82.4)
A:
NA
C2:
PF0004116=fn3=WD(100=91.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]