RnoINT0154095 @ rn6
Intron Retention
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77616228-77620495:+
Coord C1 exon
chr13:77616228-77616378
Coord A exon
chr13:77616379-77620225
Coord C2 exon
chr13:77620226-77620495
Length
3847 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ATGTTCTGTCTCTCATGCAGTCA
3' ss Score
8.96
Exon sequences
Seq C1 exon
AACAATGAAGGAGGGGTGATAGCTCAGCTCCCCAGCGATGTTACGTCCTTTAACCAAACGGGACTGAAACCTGGGGAGGAGTACATTGTGAATGTTGTAGCACTAAAGGAACAAGCCCGGAGCCCTCCGACCTCTGCCAGCGTCTCCACTG
Seq A exon
GTAAGTGCCTCCAACTCTTCCCATGGCTTCCCGGAGAACTGCCATAAACTTTGAAACCAGCGAGACCCAACCCATCCTCTCCTACTATAAGGCTTGGAGAAATTCAACCAAAAATTTTCCAAACTTCAATCTGTTTTATAACACCTTCTCCACTGAATTGGTATGAGGATTAAATTGGATATCGTATACAACATAATTATCACTTTACTGATGCATGCTTAATACCTGTCATATACACACATACACGAAAAAGGTGCTAGAAGTAGAAGCAGTAGGGGGCAGACTATTGAAATCAGTAGGCAGGGTTGAGTCACTGAGCAAAATGATGGCTCAAGTTAATTATTCTTTTGGCACCCACAGTTTATCTCATTCAGGATCATTATATTTTCAAGATCAATTCATTAATCATGTCATATTTTGCCTTATTGTCCTCTTAGCTGACAGAGGATGTTCAGTGTCGGTGCTGTAACTTAGCAACTGTGACACACATCTGTGTGACTCCTGAGAGTCGCTCAGAAGTGCTAAGTAGCATCTGGTATTAGGTTTTTTTTGGGGGGTTCTCATTTATTGATAGAGAAAGTTGGATGTAGAGCTTGTGCAAGTTTTCCTGTTAGCGACAAAAACTAAGATAGATGGGGTGAGAAAGCCAATCTTAGGTTGAGAACAAAATGTTGGCTTGGGTGGGACAGGGAACTAAAGTAAATAGTTAATTAAAGTAATAGGTGTAGCTGAACTGTTCAAACTCAGATATATGTGTCCAAACTAACAGCATCAGGTTCTAAGACTTAGAGATTTAGTCTAGAAAATGATGTTTTGTTTGTTTGTTTGTGTTTGTTTTAACTATTGGTGCAACAGGATTCCTGAGCCAAATCTCAAAGTCAGGATCAGGAGGAGATCTGTACCTTTAATAATTTTTCTCTCATATTGTCAACCAAGGAAGCTCTGTTTTGATCTCTTTTATACTTTGTACATCCATTGAAGATTTTTTTCTTAGAAAACGATGTTCGACTATGGGGAGGATGCTCAAGGAAGTGCTGTTATAATAAAGTGGGTTTCAGAAGAAACCCCATGGAAGCAAAACCAAGATGATCTGGAGGACTGTCCAGAATGCCACAGGCACAAATCTGTTCCCCAAGGCTATGCTGGATCCTGAAGACCAGACATTTCTTCAGGATAGATAATTCGCTTCTGATACAGAGTATTGCCAGGCCATTCCTAGGCCTGACATTAAAAAAAAAATTAGCAGGTAGAAGGCTGAAAAGGAAAGATGCCTCAGAAAAGGAGAAAGATATTCCATTTGAGTAGCTTGCTTCCCCGAGTATTGAGGGCACTTAAAGAAGCAATCCAACTCTGTCTTGGTTTTATATCCAAATGAATTTTTAAAATAAAATTTGAAGTACTTTTTGAGAGTTCCTTAAAATTAAAATTAAAAGCTCCCGATTTAGAAAACCATGGGAAAGCTAAGCAGCTTTCAATTAAGAAAAGAAGTTCTACTTAATGGCTTTGCTTGATGTACAGAATTACAAGAAAAAAAATGTAAAAAAGAAAGAGAAAGCAGGAAAAAAACCCACTTGCACTCTTCTTTTGGAAGGACTTATATTTGTTTAGAAATTAGTGCTGAAATTGAAATCAAGGTTGCTGCAGCCTTGATTGGAACAGGGCATTAAGACCAGTTGACCAAAGAAGAGTGGTATCCAAGATGCAGCAGGAAAGAGGGCTGGCTCCCATCCCTGCCTGCTGCTTTTAGGAAACAATCATTTGATTACTTCCTTCTGCTAAGGTCTGACCTACACCAACCCCCTCCTGTGAAGTTCTGAGTCCTCATCTGCACTCAGACTGGTTTTTTCCAGGCAGGCTATTTTATGAATGCAAATACAAGACCTCCTGCAGCTAACGCCCTCTGTGCTACATAATCACATTCTAATATGGTCAATCCATTATGATTAGGGTTTTTGGATCTAAAGAGTTGAAGGACAAAAGCTTTATGTGGTTATCTGATTTTCCCCCGATGCCTTTTTTCTTCCTGTCTCAAAAAGCTCCAGTTTAAAAAAAATGTTCTCCCCTCTCTGTTTAAAAGGATGAAGAGGTTCATACATTCCTTTCATTCACGGAACACTCTATAGGGTTTTGGACATTGAGCTTAAGTCATAGCTAGGAGACCATCTAGCCACCCTGCAATTAAGTTAAGTGAAATAGCAAAGGTCCAAGTCACCTAAAGTTGCAGGGGGTGGGGTACATTTTCTGTTTAAACACATGCCTACCTTGAGAATGATAAATAGAACTCCAAACCAAGTAGCACCAACATGATCTCATGATTTTCATTTTAACTGATACTAGACCAAAAGCCCTAAGCTGTTCACTAGGAAACAGCAACAGGCTGAGAGTCGAGCATCTAGCAAATGGCTCAAATTCGAAAAATTGAGGAACTAACTCTAGGTTAGCCTGCAGTGGTCCTGATGCAGATACCCGTGTCGGAGACAGAATTGAAAGTGGCCCAGTGTGTACAAGTTTAAAGACAAATCTTAGCCAAAGATTCCAGAGGCATCTATGGAAAGTTACTTAAACTAACTGAAGCAAAAGAAGACTTACTGGAAAGGACATAAATTGTTTCCTAGAAACCCAGGACCAGAAATATATATACCTGGGATTCATAAAAGATTTGAACAGCAAAATGGAATATCAGAAATTGAGTTACTCTCTGTATCTTTCCATAAGCCCACATGGTCACTCATTTCTGTTTGTCTGTATAACTATACCTTCCCCTCCCCCCTCTCACTCCTCTCCCTTTTTTTCTTCCCCTCCTCTCCCTCCTCTCCCTCCTCTCCCTCCTCCCTATCCTCTCCCTCCTCTCCCTCCTCCCTATCCTCTCCCTCCTCTCCCTCCTCTCCCTTCTCCCCATCCTCTCCCTCCTCTCCCTTGTCTCCTCTTCAGTTCTCTGCTCCTCACTTGCACATTTACTGTTCTCTATTTCTCTGCAAAGGTGGTAGAGAGTCTCCACACCAACCCTGGCTTTACACAGGCTAACTCTAGGGACAATTTCTAACACCAGAGAGCCTGGGAAGCCCTTTGTGTCCTGTGTCTTTAGGCTCAGAAACAAGCTGGCACTTGTGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGGGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAGGCTCACAAAAACAACTCCAGAGTTGCAGCTCTTTAAATTCAGATGAGCACATTCTCCTAACTGGCATGTTTCATGTCCACACATGCAAATGCTAGTCTGGTTGTCCAAGCCAAATAAAGCTAGATAGGAATAACTTCTGAATTCTTATAATGAGACTTTGGCAACCAAGTCTGGGCTCCATTTGTCTCTTTTATCTCACAGAGCTTTCATCAGGGCCCAGTGAAGATAAGAGTTGGGCAACAGGCACAGGCCAGAAGTTTCTTCTCTCCTCCTGTGCCATTACCTCTGAAAGAAATAGGTCAGAATCATCCAGGCTAGTAAGTGTCCTTCCCCTGCCCAGACTATGAAATGCTAGCATCTGAAACCTATAGTCAATGAGTAGAAAAAGAGCCCAAGTTCTGGGAGAACTGGATGTCAGTGTCCAAGGTGTCGACAAATTTGTGCTCCAGGAAGAGACTTCTACTTTTGCATCATATTCCCCATCTGTACAATGGATGAGGAAACCCATTCCACTGAGCAAGCTAGTATAAGAAGGAAGGATATAAACAGATGCCAAAGAAGGCTTACTCATAAATCGACATGTTCTGTCTCTCATGCAG
Seq C2 exon
TCATTGACGGGCCCACACAGATCCTGGTTCGAGATGTCTCTGATACTGTGGCCTTTGTGGAATGGACCCCACCTCGAGCCAAAGTTGATTTCATTCTATTAAAATATGGCTTGGTGGGTGGCGAAGGTGGGAAGACTACCTTCCGGCTGCAGCCTCCCCTTAGCCAGTACTCAGTGCAAGCCCTTAGACCTGGCTCCCGCTACGAGGTGTCCATCAGCGCAGTCCGGGGGACCAATGAAAGTGATGCCTCAAGCACCCAGTTTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468:ENSRNOT00000003407:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.1=84.3)
A:
NA
C2:
PF0004116=fn3=WD(100=90.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]