GgaINT0039264 @ galGal4
Intron Retention
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7017928-7020589:+
Coord C1 exon
chr8:7017928-7018078
Coord A exon
chr8:7018079-7020319
Coord C2 exon
chr8:7020320-7020589
Length
2241 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CTTTCCCCCACCCTCCGCAGTCA
3' ss Score
9.55
Exon sequences
Seq C1 exon
AACAACGAGGGTGGTGTGATTGCCCAGCTCCCCAGCACCGTCACCACCTTCAACCAGACGGGGCTGAAGCCAGGCGAGGAGTACACTGTCACCGTGGTGGCTCTGAAGGACCAAGCCAGGAGCCCCCCAGCCTCTGACAGCATCTCCACCC
Seq A exon
GTGAGTGAGCCCGGCGCTGGGCAGTGCATCCCAAGAATCTCAGCACCCCATAGCAAAATCAGCTCCAAACACAACATCTGCTGGGGCCAGAAAGCTGCCCAAGTCAGGCACTGGGGTATCAGATACACAGAAGTGGTTTTCTTCAACCAGTATTCTGAATTTGAATGCTTAGCACAACCCGAATGCCCAAGCTACAGGTGCACTGCAGCAATAGATTTTCACGCAACATTCTGTCCCTCTCCCTCCCAAATTGCTGCGAGCACAGAAAGCATGGTGTGTTTAATGGGGTTGGGAGTCACGGCTCTGGTCAGCTTGCATGCTATAGCTGCATGAATTCCTCTTCTCTGTTAATCTCACCCCAGGCACATTTGGGAGGCTGGACGTGCCCAAGAAACAACTCTAAAAGTGCACTGCCTACTCATCTCCTCCATATTAAAGCTCCCACCTGCTTTTGTGCCGCCAAACACCCTGTCCTCCCACTCATTCAAGCAAATCAGGCAGCGGGGCAGGGAGCCAGAAGCAGCTCGATGAAATTCGGCGTGTGTGGAAGAACGCAGTCCCCTCCTTGCCAAGAGGATGTGGCGCTGGGCAGAACATGGGGAGATGCTAATCTGGGGCTCTGGGGAGGAAGGGGTGGTGCAGGGATGGTCCCTCCATCAGACAGCCCCTCTCTGGCTGCAGATCTGAGCTTCCTCAGTACAGTCCTGCTCTGCTTGACATAGCTTAACAGAGACATCTCCTGGTCAAGGCAAACCTTTTCCTTTTCCTAGGAAGTCATGGGAAAAAAAAAAAAAAGCTGGTAAATCAAATTAAGGAAGTGACTTTACAAGGGAGCACAGCCCTGCTTGAATGAGGTGCCCTCCAACATGAGGTGCTCTGTTTGAATGAGCCTTGGCCAAGCTGGACTCTCAGCTCCAACCTAAAAACCCTGCTTCCCAGCAATCCTTCCTCCTCTGCTGCTGTTTTGTCCTCAGACCTCGCCCTACTACTCCCAATTCCCCCACATGTCTATTCTAAGCTCCATCATCCCTTTCCACCCCTGCATATAGCCCCCACCCTTGCGCACAGCATTCAGCACATCCTTATTACACCATGACATTTCCAATATATGTAGTGTAGAGGACATATGCAGCACAACTCAAACTACAAGACAGACTAGTGTGGTTTTTTCATCACCTTTTGGTCACAGAAGAGATAAAACAGGCAGCAGCACATCAGAAGTGCCATGGCACAGTAGCCTCTGTCCATGCTGATGGTCCTCCTGAACTCAAAGCATCCCTCACTTGGGCTGAGCACGTGATTTCCCTTGACCAAGCACTGGAGGATGCAGAGGAAGAAAGAGCCCAATTCTCTGCAAAATAGACTAAAAATGTCCTAAACAGTCTCTCAGAAGATGCTCAGTATGAATGCTTTAGCTAAAACCCCTTTATCTGAGGGTGTTTGGTGGTGGACACACTCCATAGCCCTGCTCCCAGCTGGTTATGAAGCCTCATCAGAGCAGTTGCATTCTCCCCTCCCTCCCCAGCACTAACACGTCAGCAGCTCCAAGAGCTGATCCTGCAGCTTAGCTACAAAGCAGGAGCTGGCACTGACGCTGGAACATGTCTAGAGACTTTCTCCAGCTCTTGATGGTTGGATCAGTCCTTGGCCCTATGTTATTTAACACATTGTCAACACCTTTCAAGAGCCATAATAGACAAAGTATCATTGCTGATAAATTTTGCCAACGATAGAAAGGCTTGGAAAAGAGTAAATTGAGTGGAAAGAAGGAGATCATCGATAAAAGCATTTTGAATGGCTTGAAGAGCCTGGCACAAAGGAAAACTGCATTTTTCTATGCATCACCAAGTATGAGCAGTTATCTAGGAGCAAAGAAAATGGACCGGAGAGAAATGTAGGTTTTATTCTGGGAGATCACTCCTGAATAAGACAGAGAGGAATTGTCAACACTCAGCTTGAGAAGGGCAGAAGTTGCATTGTATCTGTAATTGGCACGTATCTGCAGTGCACTGCTCAGGAGAGGTGTCAGGAAAGTGGAGGGTCTGGAATAAGGCCCTGGAACTCACCATGACCAAGCCCCTGTGAGTGCTTCAGGTTGGAAGAGTTGAGCCTCGTGCCCATGCCATCTCTAATGCACACCGCTCTGAAGGCTGAGTCACAGCTTGATGTCCCCATACCTGCTGCCCTTCCCCATCCAACTCTCCCACATTAACCACCCCTCCTTTCCCCCACCCTCCGCAG
Seq C2 exon
TCATCGACGGTCCAACGCAGATCCTGGTGCGGGATGTCTCCGACACGGTGGCCTTTGTGGAGTGGACGCCGCCGCGCGCCCGGGTGGACGCCATCCTGCTGAAGTACGGGCTGGCGGACGGGGAGGGCGGGAGGACCACCTTCCGCCTGCAGCCCCCCCTCAGCCAGTACTCCCTGCAGGCCCTGCGGCCCGGCGCCCGCTACCACCTCGCTGTCAGCGCCCTCCGGGGTGCCAACGAGAGCCAGCCGGCCCTCGCCCAGTTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526:ENSGALT00000007207:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(53.1=84.3)
A:
NA
C2:
PF0004116=fn3=WD(100=90.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]