DreINT0166800 @ danRer10
Intron Retention
Gene
ENSDARG00000011926 | tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
Coordinates
chr21:11935338-11935708:-
Coord C1 exon
chr21:11935598-11935708
Coord A exon
chr21:11935502-11935597
Coord C2 exon
chr21:11935338-11935501
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TGTGTGTGTGTCTGCTGTAGGTG
3' ss Score
11.76
Exon sequences
Seq C1 exon
GATCAGACGGCCCAGAAAAGCCTCATTTTGATTTGCGCAGTCGCATCTTTGAGCTGGACTCCTGCAATGGTAATGGCAAAGTTTGCCTTGTTTACAAGAGCTGCTCTCCAG
Seq A exon
GTGATTATGCATCCCACGCTTAATCTAGAAAGATAGCATACAAAAAGGTTTATATGATTTTAATCTACCATCTGGCTGTGTGTGTGTCTGCTGTAG
Seq C2 exon
GTGTAATGGCCCAGCAGTGTGAGGTGTGGTTCTTGGACCGATCACTTTTCTGGCACTATCTCACCCCCTCCTTCACTGCCTACTACCGGCTTATGATCACTCATCTGGGGCTGCCAGAGTGGCAATATAATTTCACTCCGTATGGCCCCAGCCCACAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011926:ENSDART00000031658:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(24.3=100)
A:
NA
C2:
PF093465=SMI1_KNR4=PD(19.1=52.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGACGGCCCAGAAAAGC
R:
GGGGGTGAGATAGTGCCAGAA
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]