MmuINT1033603 @ mm10
Intron Retention
Gene
ENSMUSG00000024269 | Tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:MGI Symbol;Acc:MGI:1913898]
Coordinates
chr18:25140446-25141637:-
Coord C1 exon
chr18:25141521-25141637
Coord A exon
chr18:25140607-25141520
Coord C2 exon
chr18:25140446-25140606
Length
914 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
AACTTCTTGTGCTGTTTTAGGGT
3' ss Score
10
Exon sequences
Seq C1 exon
GAAATGAAGACCACCAGCTAGAGAAGCCTCACTTTGACTGTCGCAGTGCAATATTTGAGCTGGATTCATGCAATGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGAAACCTG
Seq A exon
GTAAAGATCATTTCCAAAGTATGATCCTACAGTATAGATGTGTTCTTCCTGAGCTTGCCTGTCAGCCGTCACTGAATGAAAAGCTCCCCGAGACACACTCAGCCTCAGAACAATTAATAGGATGGCAACATACAAATGAGAATGGGCTGGTAGTTTTGGAAAGGAAGAGAATGGGGAAAATGTTAGAGTTATCTAGAAAGCTGATGATCCACAATGGGCTACAGGTAATTCATAAACAGGCTTAAGATAGGAACTGGCCTAATAGTGCCTGGGTCAGCTGACCTAGGATAGCCTATCAAGGAGCAGGATTGTAGGGGTGAGGTGATATACGCCTGTGGGTTGAATAACCCATTCACTGGGGTCACCTAAGAACATCAGAAAACACAAATATTTATATTACTATTCATAACAGTAGCAGAATTAGTTAAGAAGTAGCAACAAAAATAATTTTATGGCTGGAGGTCACCACAACCTGAGGAACTGTAAAGGGTTGTGGCAGTAGGAAGGTTGAGAGCCACTGGTATAGACTCTTTTACCTTGGTTTTTGGTTTGGTTTTGTTTTCCATAGCACTTTTTATTAAGAGACCTCTTTTTAAAAGACTGATCCATTCAAGGTTTCTTTCCATCAAAAAAGAAGACGGAGTGCTCAGTCCGCAGAGAACAGAAGAATCTGCTAAGATAGCCTTAATGAGCTGCCACAGGGCCAAAGCAAGCAGGTATATCCACGGGCTGATCTCTGAGTATCAAATAAACAGGTAGGAGCAGCTAGAACAGAGCAGGACTAGAAGCCTAAGAGGGAAGTGTTATGTTTTCAACCCTCTCTACTATGAAGTTTCTCTTAACTATCAATGTATATTGACATTGTATTTAAAAGGGAAAATGCATTAACTGTCTAACTTCTTGTGCTGTTTTAG
Seq C2 exon
GGTTAGCTCATGACACTGAGATATGGTTCCTGGACAGAGCATTATACTGGCACTTTCTCACGGATACCTTTACCGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAGTATGCCTTTACCAGCTATGGCATTAGCCCACAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024269:ENSMUST00000115817:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGAAGACCACCAGCTAGAGA
R:
ATGCCATAGCTGGTAAAGGCA
Band lengths:
262-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types