GgaINT0065682 @ galGal3
Intron Retention
Gene
ENSGALG00000002429 | C18orf10
Description
NA
Coordinates
chrZ:6643807-6645548:+
Coord C1 exon
chrZ:6643807-6643920
Coord A exon
chrZ:6643921-6645387
Coord C2 exon
chrZ:6645388-6645548
Length
1467 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTGCTTGTGTGGTTCTAGTTG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTAATGAAGACAAACCAGAGAAACCACACTTTGATTCTCGTAGTCTTATTTTTGAACTAGACCCGTGCAATGGGAATGGGAAAGTTTGTCTCGTTTATAGGCATACTAAACCAG
Seq A exon
GTGAGACTGACAAGAAAAGAGTTATCCATCTCTTTTTGAAGACTGTAGCTGGGAGGCACATGCATAGAAACATAAAATTTAGACCTTCTTTGCAATTTATAGATGAACATTTACTGAGACATCCAGCCTCTGCTGAACTCAGTGGCTAAGTCTTACAGTGGCTAGTTGGAGATAACATTTTCCCTTCTTTTAAAATTTGAGTCTAAGTTATAACTTAATAGTTCTCATACATAGTGTTGTTGCTTACTGAAACAGGAAAGCACTCACATATAACTGACAGACAACTATGTTGAAATAATGCAGTGAGCTAGAATTTCAGCTGCTAGCTTGTATCTGGTTACTTACATGTCTTAGAACAATTCGTTTATGTTTTAGTAAGAAACATAAACTGCTTAGAAGAAGAAGGTGGATGACAAAAGGGTCTTCATCTCAGTCAGGCAGATTTGGACTGTTTCAGTCACCTTGAATGTGCTTGCAGAGCCTCCAGGTCCTAAGTAGGTCAAAATTTGCTTGGAAGAGGTTGAAAGGCAGAGCAAAAGACATGAGATGAGCTATGCTTTCTAAAACATACCAGAAAAGTTGCTTTCAATCAGGGATCAGTGGAACATGCAAGTCTTCTTATAAATTAGCTGTCATCTGTCAAAGTGCACAGGTCAGTAGGTGTGTGTGTGTACGTGCATGTACACTGTGTGAGATTATGCAATTGTGGTATACCTGTTCTTAAGAAAAGCCTTTGTTTGTTATCCTGTGTTTTTAATTGGATATGACTTTAACTCCCAGGGCAGAAACTTACTGCTTGTCATCTTGCTTTCAGTGGTAGCGATTTCAGTCCACGCAACGGTTAACCTGAACAAGGGGAGGGAGTGTTGTTTACTGCTGCTGATGTCAGTGTAGGGGACTGTGTGTTTAACTGACAGCATTCTCTGTCTCCATTTTCTAAGTAAAATCACTTATTTTTATGCTAGTAATCTGATGGTGGTTTCTTCAAAGGCTGTGCCACCAGAGAANNNNNNNNNNGAATACACTGTGCCATGAGTTCTGGACTTTACTCTTTATTTCACATGATGATTAGTTGTTTGTATTTTGTGGGGCAGATAAATGTTGGCCATGATAATGCCTTGAAATTACGTTACAAAGTTACTGTTGTCTGAGGATGTTCAATGTAGAGGGTCAGTCCCAAGCTAGATAGAAATAGGATTGCATAGGTTTTACAGTGGGGAAAGTGACTGTAATGACTATTGTGTAGAATAATAGAATAGCAGAATCAGGATTTCTTCAGACATCAAGCTCTTATCCATTAAACCACTTTCCCTGTGGATAATCATCTGTGTTAGTCAGGGATGCTGGGTTTTAGAAGGTGCAGCCTTTTCCATAACTATTGTTTTGTCTCCCACTTGACAGTGGGTCAGGGTTTGATCTCATATCACTATATGAGCAACAATATGGTTTCTGCTTGTGTGGTTCTAG
Seq C2 exon
TTGTGTCCCCAGACACAGAGATATGGTTCCTAGACAGAGCTCTGTATTGGCATTTCCTCACCAAAACCTTCACAGCCTACTACCGCCTGCTCATCACTCACTTGGGTCTCCCACAGTGGCAGTATGCCTTCACCAGCTATGGAGTCAGCCCTCAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002429:ENSGALT00000003820:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACAAACCAGAGAAACCACA
R:
CTTGGCTTGAGGGCTGACTC
Band lengths:
271-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]