DreINT0169076 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50142319-50143954:-
Coord C1 exon
chr9:50143754-50143954
Coord A exon
chr9:50142449-50143753
Coord C2 exon
chr9:50142319-50142448
Length
1305 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTTC
5' ss Score
0.45
3' ss Seq
ACTGGTGTTGTTCTCTGCAGTCT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAGCTGTTATATCTGCGGGCTCTGTTGGCTGTGAAAAAGCGCCGGCCCCCAGATGAGGTGACCAACCTGTTAAACGACACTGTGGACACGCACTTTTCTGCCCTGCAGGGTCTGCCTCTCAGTGTCGAGTACTTCGAGAAGCTCAACCCAGACTTCCTGCTCGAGATTGCCAAGGAATATCTCGCACTGTGTCCTGCCAAG
Seq A exon
GTCTTCTCTTCTGTGCCTAGAAAACAATTTAAAAACATTTGTAATTTACCAAACAGTTAGAACTCTCTAATAACTGCCTAGTAACCAATCAGCACACTCTTTTAACTGCCTAAGAACCAATTAGAACACTCTTAGTAACTGCCTAGTAACCAATCAGAACACTAGTTGATTCTTATAAATACAGTGAGCATTCTAGTAACTTCCCAACAACCAATCAGAACACTCCAGCAACTGTCTAGTGACCAATCAGAACACAAGTGGATTCCTATAAACACACTAAGCATTCTAGTCGCTTACTAACAACCAGTCAGAACACTAGAAAATTACTAGAAACACCTTGAGCATTCTAGTAATTGCCTAACAACCAATCAGAACACTCTAGTAACTGTCTAGTGACCAATCAGAACACAAGTGGATTCATATAAACACACTGAGCATTCTAGTCACTTACTAACGACCAATCAGAACACTCTAGCAACTGTTTAATAACCAATCAGAACATTAGAGAATTACTAGAAACACCTTGAGCATTCTAGTAATTTCCTAACAACCAATCAGAACACTCTAGTAACTAGTAGCCAATCAGAATTGAAGTAGATTCCAATAAACACTCTAAACATTAGTAACATCATTAGTAACTTTCAACAAATCGGAACCTTATCAGCCAATCAGTACATTGTAATAACCCCCTATCAACCAATCAGAACACTCTAGTAACTACTTAGGATGTTACTTTAATGCCCAAGGTGTTTTTAAATAATTAGTAGAGTGTTCTGATTGGTTGATGGGATGTAACATTAAAGCCCAAGGTGTTTCTAACAACCAATCAGAACATTCTAGTAACTGCATAGCAACAACCAATTAAGGCTTTACTTAATGACTATCAACCAATCAGAGCACTGAAGTAACTGCCTAAAAACAAATCAATACTCTAATAGCTACTGGCAAACACTTATAAACAAACATTTTTATAACTCAAAATCAACCAATCAAAACACTCTAGTAACTGTCTAACAACCAATCAAAACTCTTTTGTTACTGCCACCAACCTTCCAGAACAACTGACTTGCAAGGCAATAGCAAACACCCTGAAAACTGTAGTAATTCTCAAGCGACCAATCAGAACATGCCTTGCACAGAAATAGTAAGCCCATGTAACATGCTTGTAACCACCTAGGAACACCCTTGTTACATATAGGACACCCTAGCAATCACCTAGCATCAGTCTGCTTTGCATGCTTCATCTGGAAGGGGTGTTGATGTACTGTCCTCCTGTGGTTTATTGACTGGTGTTGTTCTCTGCAG
Seq C2 exon
TCTCCAGCTCTCAGTCAGCCTTCTTCACCTCAGCTGCAGCATGCCGCATCTGTGCTGGATACCGTGATGAAAGTAGTGCCTGGATTACTGCAGGCTGTCTTTCTGATGGCCAGAGTCCGATTTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(17.1=19.4)
A:
NA
C2:
PF134321=TPR_16=PU(18.2=22.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTATATCTGCGGGCTCT
R:
GACTGAAATCGGACTCTGGCC
Band lengths:
327-1632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]