RnoINT0157578 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52332941-52333177:-
Coord C1 exon
chr3:52333118-52333177
Coord A exon
chr3:52333071-52333117
Coord C2 exon
chr3:52332941-52333070
Length
47 bp
Sequences
Splice sites
5' ss Seq
CGCTATATA
5' ss Score
-34.57
3' ss Seq
ATCTGATCTGCTTTGTTTAGCCT
3' ss Score
4.39
Exon sequences
Seq C1 exon
AAAAACACTAGGTTCTTTTCCCATATCAGTCACACTAAAATCAGTGTGTGTTTAGTCCGC
Seq A exon
TATATATGACCATAAACTTAGAATGTGATCTGATCTGCTTTGTTTAG
Seq C2 exon
CCTGCAGGTCCTGGGCAGCCTCTCTCCCCAGTCCTCAGACGTTGTTCTTCAGTTCTGGAGACGATTATAAGAAGTGTACCAGGTCTTCCGCAAGCTGTCTTCCTAATGGCCAAAGTGAAGTATCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(22.7=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGTGTGTTTAGTCCGC
R:
TGGCCATTAGGAAGACAGCTTG
Band lengths:
133-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]