HsaINT0174174 @ hg38
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165924549-165929335:-
Coord C1 exon
chr2:165929135-165929335
Coord A exon
chr2:165924679-165929134
Coord C2 exon
chr2:165924549-165924678
Length
4456 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGCTGATTTGTTTTGTTTAGCCT
3' ss Score
5.5
Exon sequences
Seq C1 exon
GAATTAATCTATTTACATGCAGTTCTTGCCATGAAGAAAAATAAACGACAAGAAGAAGTTATTAATTTGTTAAATGATGTCCTGGACACTCACTTTTCACAATTAGAAGGTTTGCCTCTTGGCATACAGTATTTTGAAAAGCTAAATCCTGATTTCTTGTTAGAAATTGTTATGGAGTATCTGAGCTTCTGTCCAATGCAG
Seq A exon
GTAAGTAATTATGGGACTTACTTTCAAGGATGCGTTTACTTGATGTTTTATGAAAGAACTTAAAAGTTTTCTTTGATGCATTAGACTATATCGGCATCTTAAAATGGTAGTATTTGTACCTATGTTAGTTGAAATCGCTTTTAATCAGACTGTTTTTAGTAATGACTGCTGTCAACTACTGAAAGTATTGGTTTGCAAATATTCATTTGTATTTCATAAAATCTTAAAATCTTCAGTTTAAAGAAATATTAAAAGGCATCTAATTCAGACACCTACCTTATATTTGCTACCAGTCTGTAACATCACTGTCAATGTCTATCCCATGTCTGGACACACTAAAATGAAGTTCTTGTCATATAACTATGATTGTTAGCCTGTGTTTCCTGTGTTAAGTCAAACTCTGCTTTTGGTTAAAAAAAAAAAAAAGAAAGGACCATTTACTGGTCCTCCTTCTGCTCCCTAGATTGACATAGGGCAAGTCCAGTTGCTTAGAGCAAGGATCATTCCTCATTCATTAAACAGACCTTCAGATATTGGCAATTAGTTTTCACATTCCACTAAACAACTCCAGGTTTCCAGCCATTTATGTTTTATATGAAATAGTTTTGAGAATTCTGTGTGTGAATCTGATGATATTCTTTATTTTGTCTGTGCCTCTCATTAAGTTTACTATTCCAAACGTGGATTTGACCTGCAAGAACTAGAGTAGACCTTTTCCTCCCTTATTCTGGAAGTCCATCCAACTTTCTTTTTATAAATCACATTACATTAATGACCTCTGTTGAATTAACAGTTAATTAAAGACTTTCAGTCTCTTACTTGTTGTACTTTTGGACTCAAATGTAGGACTCTACATTTATTCCTGTGAAATTTTATCTTTTCAGATTCATCTCATAATTCCATGTTATCATATTCCTTGTGGATCATGATTGTCACCTATTTTAGATGGATCTTTATTGTCATCTGTCATCTGCTTTATCTAGCTCTGAGATAACTATTACTATAATGTTCTTTTCCAAGCATTAACAGTTTTGAGTATAATTGAAGATGAAACCCTATGTTGTACTACCAGAGATTTCTTTCCAAATTGATGTGGATTTATTAGTCAGCACTCTTATTACAGATAGTAAGCAGATACAGACATCCTAACTTTATTATATTCAGCTCACATTCAGCACAGGGATATCAGAGCAGGCACTATCAAGCGTTCCATTGCTGAAAGCAAACTTCTTAGCATTGTCCCTGATCTATAGCTTCAGTAACTGTGTTAACATGGGAAATAAGGAAAATGACCTTCCCTTAGGGAACCCATACAGACTTTTTGATTATCATGTCCTTTTTTAGGCTTTCATTACTATTTATTTTTTAAACTTAAACCCTCATAGAATTGTACCAGGGGTTGACCTCAGACTCCCCAGTCATAATCCATTTTCCCTTGCTTGGAAGTTGGAATACATTTTTTTCAGTATTAATCTAGTATTCAGGATTCATTCTACAAATGTACAAATGTTTATAGAGTACCTAGCACTCTACTTAGAGCTGGGGAAATACCCATGTAAAACAAACTACATTCCTTTCCCCTGAAGCATGTATTCCAACAGGAGGAGACAGATAATATCATTAAGTCAATTGTATAATATGTTTAGAAAATGACAGGAGAAAATAATAGAGCATGGTTGGGTGATGGCGATTTTAGATACAGTGGTCAGGATAGGCCTCATGAAGAGGGTAAGATCTGAACAAAGACTTGAAAATAGGATATATATATATATATATAAAATATATTATATATATATTATATATTATATATATATTATATAATATATAATATATATATATAACTACTAGGATATATATATATATAACTACTAGGATATATATATATATAACTACTAGGATATATATATATATATAACTACTAGGATATATATATATATAACTACTAGGATATATATATATATAACTGTTAGGATATATATATATATATAACTACTAGGATATATATATATATATATCTACTAGGATATATATATATATATATCTACTAGGATATATATATATATATATCTACTAGGATATATATATATACACATATATATATATATAACTACTAGGAGATATATATATATATATATATATATATGGGAGTTTATATATATACTCCATATATACATATGGGAGTTTATTAAAGAATATTAACTCACACGATCACAGTGTCCCACAATAGGCTGTCTGTAAGCCGAGGAGCAAAGAAGCCAGTCCGAGTCCCAAAGCTGAAGAACTTGGAGTCCAATGTTCAAGGGCAGGAAGCATCCAGCATGGGAGAAAGATGTAGACTGGGAGGCTAAGCCTGTCTAGTCTTTTCACATTTTTCTCCCTGCTTTATATTCCAGCCATGCTGGCAGCTGATTAGACAGTGCCCACCCAAATTAAGGGTGGGTCTGCCTTTCTCAGCCTCTTGACTCAAACGTTAATCTCCTTTGGCAACATCCTCACAGACACACCCAGGATCAAGACTTTGCATCCTTCAGTACAATCAAGTTGACAGTATTAACCATCACAGAACATGTGAAAATATGGTAGAGTGTTTCAGACAATGGGAGCAGCTGGTGCAGAAGCCCAAAGGGACACGAGGAGACAAATGTGGCTGGGGCAGGGTGAGGAGGAGGAGAGTAGTCAGAGATGAGGTCATCCCACAGGAGACCAGCCCAGGTAGGGCCATAGCAGTTCTTATAACTCCTTTGGCCTTAATTCTGAGTACAATGGGGTACAATGGGGAGTCACCAAAAGGCTTCCAGCATGATCCAAGTCAACATTTTAACTCAATGTTTTAATGGATTTCTCTATCAGATGTGCTGAGAATAAACTGTAGATAGAACAAGAAATCATGCATTAAGTGGTAGTTGGGCCTCTAGTTCAAATGGACATCCTATTTTCCTTTACCAGGAAATTCTGTTTTCCTTTACCAGCATGATAGAAAGTAATCAGCATATGTGATACTGTTTTCATAGGGAAATATCAGAAAGGCAGAATTGTCTCTTTAGCTCTGTTCCTACTTCTTTGACCGTTTTATAGACATAATTTTGTTTAGAATTTTAATTGAACAAACGATATCTTAAAGATTGTCTGCATAACTATTTTTTCTATGATTGTACATTGAAATTGTTTGCAGTGAAAATGATGGTTGTTCTCAATAACTCATTCTTAGCAGGTGACAAAGAACATTATCATAACCTCACCATCACTTACACTTTCACTATTTTTACTTAGGCTGAAAAAAACAGATATTTTTAAACTGTTTGCTCTGTATCTATTACCGTGCAAAGAAGCATAAAAATCTTATCTTCAAGACACATAAAAACCCGTAGGCCTATAAAAGAAGGAAAACTAAATATGAAACTACCAGTAGAACTGTATGGGTATTATACAGTGCCAAATTTTATTATATAGATTATATATGATAAAGAAGTTGAAGTATTCTAGGCAATAATAGTCATATTCTGATTATCTTTTTGAGCGTATATATTGTGTGTGTCAACATAAGTAAGTTGTAGCACTTTCTTGTTGGTAATAATGGCTCATTATAGGAGTAATTTTCCATAAGAAGGCACAGTCCAATTGAAGAGCTTTATGTGTCAGGGGGCTTGGGGTGGAGAGGATCATCCTTACATAAAGAAACAGCCTTAGTAAGGCAAAGCAGGAGGAATGAACATTTTATATTTAAATTCTGATATCACATTACTAAATTGTGATTGGATGACCATTGGATAAAAGTTGGTTGGGTAGACAGCCATTATAAGAAGAAGAAACAGTGAAAAGAATAAAGTAGTGTTCTAGTATCACTTTAATTATCATACTCATTATTAATTGAAAGGAAAACTTTGAGGGTCTAAAACATGCCGGGATGAAGAGTGGGGAATGTAAAGGTATGAGACATTTAGTTTAGCATAGTGAGTGTTCTACCTTCTGTTTACCACTGGGGGAAATCTGAATTCTTTAAAAAACTGGTTTACAATACTCTAGGGGATAATGAAAGTAATTGAATTGAGCAAATCACAAGGCAAATCTAGAATTCGAACACTTACTGCCTTGACTCTGTCAGTTCTAGCAAGAAACTGTACCTCTCAGTTATCTTTCCTTTAACAGATATATTTCTCTGATAAAACTTTTGAATAGATAATACCCACTTGATATGTTATCCATTTAGAATTGTATAATAGTTTCATAATTATTTTGCTGAACAAGAGCCATTATTTGCATTGTCTGTTCATAGATCCCAGGGAAATAAATTAGTATTAGTTAAGTCATAATAAAGGTATTACAAAATAAGTTAAATCAAAGAAATTTTAGAAAAATGTATATAGCTTGGTTAGTTATACTAAAATTAATATATGTTTATTTTAGGTAAATATTATTTTTACACTTATAAAATGATCTGCTGATTTGTTTTGTTTAG
Seq C2 exon
CCTGCAAGTCCTGGGCAACCTCTTTGTCCACTTCTCAGGCGTTGCATCTCAGTCCTGGAGACTGTAGTAAGAACTGTTCCAGGTCTTCTGCAAACAGTCTTCCTAATAGCAAAAGTGAAATATTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607:ENST00000243344:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(20.3=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains