DreINT0169404 @ danRer10
Intron Retention
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33026620-33031162:+
Coord C1 exon
chr5:33026620-33026719
Coord A exon
chr5:33026720-33031028
Coord C2 exon
chr5:33031029-33031162
Length
4309 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
ACTATCCTGTCGGTCAGCAGGAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
TTTCCGATGGGTAGGCGGACAGCCTGCGATATCTACTGGCACGGCGTCTCTTTTCATGACAACGAGAACATTGTCTCTGGGCAAGTCAACAAATTCCCAG
Seq A exon
GTAAACTTTACAAAAAGTAGTTCTTGAGAGATCTTGTCACAGTAGAAACATCATCACTGTTATGCCAGGAACATACTGCAAGATTTTCTTGATTGGCACATCGATGATTTTCTCACACTACAAGACTAATGTCATGTGTACACAGGTATTTTAATATGTACACAGAATGCATTATCTACTATATGCAGTATGCATAGACTATTTTTGGGCAAATGACCTAGAGAATCCTGTCAAAATTGGTTTGTGACACCTAAAAATACTCAAATAATAAATAATATAAATAATAAATAATTAATAAATAAACAATGATACTCCCCAAGACTTTTCCAATGTACCAAGTATTATTTTACCCACACTGTCTTGCAAAATAAAGGAATGCACAATTAACTAACAACAGTTATTCTCTGTGCATTTACGAATGAATTAATGCAAACAATAAACAGAAATGCATGCTTCTGCCAACAAATCTTGATGCACACGGAGAGATCATTAAAAATACATTATTTAAAAAAAAAATCTGACTAAAAATGTTTGTGACAAAAAAAATAAGTTTTTTTTTTTTCTTACTGATAAAAATAAACAAAACCCAAAATAATTCTTACCTAGCACACATGCAACATTGGAATAAATCTAGGCATGGGGCGATAACCGTTTTCAACTGTTTTAGTTCACCACGGTTTAGAAAAGTCAAGGTTTTAATATTGACAAAACTACCTATGGAATATTTACGGAAGTTTCTTCAGTATCTCCAGCTGAAAAGGACCCTCCACATCAAAAGCTACTGTTCCAAAATGCTTTAAATGTTTCTTAAAATAAAATATATTGAGATCAATGGGGAAAAATGTTGTTTTTACCCAGATTAATTAAAATACCATGTTATCCTGAAACTTTTATCCAAGTTTATCAAACCGTCAGAATCTTATACCGGCTCATGCCTAAATGATTCACATCCAGTCAAGCAGTCACATAAGTCTAACCACAGAAGGTCAAATATTTTAATGCATCCACAGCTCAAATCAGATCTGAATCCTATATGACCTGAAAATGTAGAATATGAAGTGCATGCTGATGTCATAAGGCAAAAACACACTCTAGCGTGAGTTTTCAGATACCTGATACAGTTTTGGGTTTCAGTCACCTGATACTGCTTTTTTATGTGGACAAACAGCCAAACCACATAGAAAAAAACTGCAGTTTAGCAAAAATATCTATATGTGTGTGGACCGAGCTTAACTGGCTTACCATTTAGTCACTGTTGGGTACTCGGCACACAATGAATCGTAAACATGGGCACACATTACAAATCATTTCAATAGGAAGATTCACTCACATCTTTGCCTGTTCTATACATTTTATACCAAACATAAATGGGAAGTGATACATTAAATAATAGAGCCAGATATTAGTCAGCTATTCTCATGTAAAGAAAAGGCATCTCAGAAGGAGCTTGCAATACAAGCTGTCTGTGCCCTGATTTGCTCTAAAAGTAAACAAAAGGATGATGGAGAAATGGTTGCATTCACAAGTTTGGTTGAAAGTCTATGCCTCATCCTCCTAATCTTGCTCTCCTATTGGCTGTAGTTGCATTACTCCTCCTCCTGAACTTTTGTTCACTCAGTGGTGGTAATTCTTTCACTCCTCCCCCTAATTTTCACTGCACGGATATAGCTTTATTCTGAATATTGAACCATATGGACCCTTTTCACAAGCCTGATATGGCACGTTTAACTGTCATCAGCATCTTAAATCCTTGAAAGTTTTTAATATTTAGAATTTTTTTTAAAGCGTTTGAACATTTGCACATGCATTATATCATCTTTGCATTAAATTACAAAGAGTGAATTAATGCTTGTGTGAGGCGTTTCTAATACAGAGTCTAGGGGGGTAGCACAGTAAATTTGACATCATTCTCTCCTCTGGCTGCCATCATCAGTCTCACACATTTTTTTTCCTTTTACTGAAAGTCTTGATAACACCATTGTGGACTCATTCTTTTATTATTTCAGCAAATAAAATCTTTGTTGTTTTCTCCCATTCACTGCACTCTTAAGTTTTCCCAGCTATGCCGACTTCGGTTACTAAGAAACCCGGAAATGTGAAAAGGGTCTATTGCATATTTCATAAACATAAACACACAAATACATGCAATGATTGGTTCAGCTAAAAATGAAGCTCTTAGTTGTAAGAGTAGAGTGCAATCCATAATCTAAAACAACATGAAAAATAATAAGCACTGCTGATTTTTAATGTCATTGTGATTGCATCAGATGCGGGACATGTATGTTCACTTTTATAAGCAGTTGCTTACCATGTTTGCATCTCTCATTTGAACGCACTTATAAAATACAGTTGAAACCAGAAGTTTACATACACTGTATAAAAAGGCACATAACCATTTAAAAGAAGTCAGATGTTAATGTGACTAAACTTCTTCTTTTTTAGGTAAGTCAGGATTATCAAATTTGTTTTTGTTATGCTTAATAGCAGAATAATGTGAGAGATATTTTTTGAGAAATTGTTATAACTTTTCTTGAAAGTAAAGTTTACTTACATTAAGATTGTTATGCCTTTGAAAAAGCTCAGATGATGGTGTCAAGGTTTTGGAAGTTTCTGATTGGCTAATTGACAACATTTGAGTTAATTGGAGGCACAACTGTAGAATAGTATTTAAGGAAAACCTTAAACACACGGCTTCCTTGTGTGACAACATGGAAAAATCAACAAGACAGAATCAAAAAAAAAAAAAAGATTGCAATTTGCTAAATTACACTGGGAAAAGGAATTATTTTTGGAAGACATGTACTGTGGTCTAATGGAACTAAGATTGAATTGTTTGGCCATAATGACCAGTGTTACATTTGGATGACAAAGGGGAAAGCTTATAAGCCTAGGAACACCATCCCAACTGTGAAGTATGGGGGCGACAGCATCATGTTGTGGGGCTGCTTTGCTGCAGAAGGGACTGGTCCACTTTACAGCATAGATGGCATCATAAAGAACATTATGTAGAAATACTGAAGCAACATCTCAAGACATCAGCCAGGAAATTAAAACTTGGCCACAAACGGGTCTTCCAAACAGACCATGACACTAAGCATACTGCCAAATTAGTTCAAATGTGCTTTAAAGACAACAGAGTGACCATCACAAAGCCCTGATCTCAATCCTATAGAACATTTGTGGGCAGAGTTGAAAAAGCTTGTGCGAGTAAGACAGCCAACAAATTTGTCTCAGTTACACCAATTCTGTCAGGAGGAATGGGCCAAAATTCCTTCAAATTATTGTGAGAAGCTTGTGGAAGGACACCCAAAACATTTGAACAAAGTTATACAGTTTAAAAGCAAAGCTAACAAAATACCAAGGAAATTTATGTAAACTTTTAAAAGTCTAGAAATTAATAGAAAATTATTTTTAAAAACTTCTCTCATTATTCTGGCATTTAGCATATGTAAATGGTTTAGGTAATCCTAACGGACCTAAAATAGTAAACGTTTAGTATGATTTACCATCAGACATTTAACAAAAATGGTTATATTCCTTTTTTTAGTGTGTATGTAAACTTCTGGTTTCAACTGTACATGCAATAACAATACAACAATCTGACCTGTTTATGTCTCACTGATTTCCACTTGGGCTGATATTCCAGTATTGTGCCCACTGTCTCTGGTGATACTGATTCCTGTGTAAATAAATAAAGTGTTATTTTTTAAAAGTTTTTTTTTTTTAACTCAAAACTGTTTTGAAATTAAAATATATGAAACAAAATGTGTCCATAAATCACAAACTGTAACTATCAAAGTCTTTGCTAAAACAAATTTACTTCAAAAACTCAAAACCAGTACTAACTGTTGTCAGACGAGCAAACAACTGTGCATTCGAAAACACAATTAAATGAATTTCTAGAATCATAAAGCTGCTGATACAGGCCACATTCTGCACTTACTTTTTGAAGAAAGTTTTCAGTCATAGGGTGAGTATTGTTTCCTGAAATCTTGAATTCATTAGGGAGTGCTGCTGACTCATGTCTTGGATGTAATATGGCTGTTTTCATAGCTGTATTGACAGTTGCTTTCACACAGGCAGGCTGTCCAAGCCTGTGTGTGAACTCTATTGAGCCACTGAAAGAAAATCATCAAGTGATTTAATGAAACTGCTGGGAAATAGGGCTTTAAAAATGTGTCATTTTTGTTGAGAGCATGACTCCCCTGTAGGGCTATAAACGGATGGGGAACGACGGCATCTCTGGCCTTTGTGCCATTTCTTTTTGACTTCACTCTGTTTTCTCATTAACTATCCTGTCGGTCAGCAG
Seq C2 exon
GAATGATAGAGATGCTGAGGAAGATAAATCTGAGTCGAGCTGTGCGCACCATGCAGGAGATTTACCCGGAGGAGTATAACTTCTATCCACGATCCTGGATTCTGCCTGAGGAATACCAGCTCTTCTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374:ENSDART00000085684:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.8=44.1)
A:
NA
C2:
PF0313310=TTL=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]