MmuINT0167539 @ mm10
Intron Retention
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35940674-35944959:-
Coord C1 exon
chr2:35944863-35944959
Coord A exon
chr2:35940808-35944862
Coord C2 exon
chr2:35940674-35940807
Length
4055 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
AGCTTCTCCCGTCCCCCCAGGCA
3' ss Score
9.87
Exon sequences
Seq C1 exon
TTCCCATTTGGCCGGCGCTTGCCTTGTGATATCTACTGGCATGGAGTTTCATTTCGTGACAGTGACATACTCTCCGGTCAAGTGAACAAATTTCCAG
Seq A exon
GTATCTGAAGTTATTGTTGGCCTTTAGAAGTATCCCTAGGTCCAAAGTCAGAGTAGAGTCTGCTGCAAGAGCAGGGCACTGTTTTCAGATCAAACATGAGGACCCTTAACTGAGATTCTCTGGCCATGCTCTGCTGGGCTGCTGTTGCTATGGGGAAGAAATCAGGGTGGTGGGTGGGGGGAGTCCTGAGAGCTGACACTTCTGAGGGTCTGAAGGTATAGGCTGGGCCTTCACCGGGGAGCCCTGAGAGCTGACCCTTCCGAGGGTCTGAAGGTGCAGGCTGGGCCCTCACTGGTTAAAGTTGTGCTTTCTCAGTGTAGTTTCCACTGGTACAAGAACATGAGTTAGGGGGTCAGGAAGTGACTCAGGGTGAAGTGCTTCCTGTGCAAGCATGAGGACTGAGGTTTGAATCCCCAGCACTCAAGGCATGGTGGTCCACCCATAATCTCAGCTCCCTGGGAATACAAAGGACCCTTAGGGAAAGCTGCTAGCTTGATTAGTTAAACTGGTGAGCTCTGGGTCCAGTTGGGGGAACCTGCCCAAGAGGAGGAGGAGGGTGATGGAGGAAGATACCAGATGTTAACCTCTGGGCCTCTACATATGTGTGTAAACATCTGCATGTTCATCAGCACACATGTGCAAGTGCACACATGCATACCACACACATATGTAAAAATATACAAAATAAAAGAACATGCTTTGAACTTGTCAGGTTAAAATATAATACAGTGGGCCCAGTGAAGGAACTCTAGTGTCTAGCAGGAACCAGAGTTCTGTGACTCGTCATCACAGAAATGAAGACCCCATCGGCTTTCTCTTCAGGTATCACAGTTGAAGGTACCATGAGAGTGAGCTCTCCTGGTCTCCACTAAGCTTCACAGGCTGTGGACAGCCTCTTCCTTTTACTATGGGTCTCATGATGAGACTTAGCCTGCAAGGCCTCGGTGGTAGGACATGGTTACAGTCATCCCCATGGTTGCTTTTCTTTTGTCTTTCAGTCTCTGTATTATCTCCTCTACAGTCACCATTCCTAATGGCTGTGTGACAGACAGCAGAGCCACAGGGCAGTGGGACTGCTTAGGGAGGAGAAAACATTTGACTGAACTTCTAGATACAGGCCCCACACTTATTTTGTTAATGGATTGTATCACAATGTTATATTAAATACAAATAATATATATTTTTAAATTTTATGTATGTGAGTATACTGTAGCTAGCCAGATGTGGTGGCTCATGCTTGAGAAACTGAGACAGGAGGATTACCATAAGTTGGAGGCCAGCCTAGGCAACATAATGAGTTACAGGCTAGCCTAGGCCATGGAGTGAGACCATGTCTTAAGACCAAAACAAACAAACAAAAGCCTACCGATTCTCAGATTACACATTCCATATGCTGGGTAGTTATTTTCCCACACACTATGGGGTTTTAACTGAACTACTGAGACATACAAAGTTCTACTATAGGCAGTACACATGGAAGTACTATAGGTTCACATGGAAAGACGCAGGGTAGGAAGCATGACATGGCTGCGGCAGTATGAAGCATTTCTCTTTAGTAGAATATTTGCAAATGCTCCAGGGTCTCTGGCCCTTAGTTAAAGCAAGATGAGACGAGGAGACAAGGCTCACATCTGACTTGGCATAGATACACACAGATGCCAGCATCTTTCGTAATTCTGCTGACACGGCATCCCCTCAAGGCTTATGCTGAGTTACAAGATTGAGTGCTCAGGAAGTCTGGGGCCTCGGCTTCCTGCTGGCTGTTCACTTGGCTTACCTATCCAAGTTCGTGTTAACCGGGTGCCCTGCTCTTTGACAACACAGAAGATATCCCACCTTTCTTGGATTTTTTTTGAGGGGAGCAGAGTTAGACGTTATCCCAAGGTCAAATTTATCCTCAGAGAAGAGAAAAGGTTTTGTTATCGAGAGTGAGCCTTACAGTCAGGGTCCTTGCACACCGATTTTAGTGGCCTTGCTACTATTTATTTCTGTCTTGCTGCTCACAAAAAAGGCTACCAAAAACAAACAAAAAAAAAAAACCAAAAACAAAAAAAACTTCTTGGGGTCATGGGAGAAAACAATTTGCACACAACCCTCTACATGGGCAGAGTTGTTGAGACACGATTCTGCAATTCTTCGGATGAGGTTGCCTATCACTTTCCTTTCTGTCCTGTCTCCCCTGATGGCTGAGGATGAGAAGTAGCTCAGGGTCTATCTACATCAGGAATATGAAGCCCAGAGGAAGCGACTAGCCTCACACAAGAGCACTCATTCCAAAGGCGAGCCTGCTCCATCCTCTGCTCAGCATGCCAGTGACTGGAACATGTAATTTTCCACTTTGCAAACAGCAGTTAATTAACTGTAATGATACAGCAGCCTTTGAAACCTCCAGGTAGGGAAAGGCACCTTGGACAGACAGAAACCCACCAAGGCCGGGGGTTCCTGGTGGGGGGGTTCGGGGGAGCAATTCCAGGCAGTACTGACTGGCTTTTGGCTTCTGTTTTGTCTGGGTTTATCTCCTGCCTCATATACACGCCTTTCCCACACATGGCGGATGCTCTAGAGTAAGTTCTGAAGGATGCTCCAGGAGAGAGTGTGCTAGAAACACAGCACACACTGAGAGCTTTAGGGTACTCATGGCATTTACCTTCTCTGTGCCACTGTATGAGATGTCATTTGCTTTTCTATGGGCAATTTCCTTAGTTCAAAATACATTTTGTATTGTAAGTGATATATTAAGATTCTTCATTTAAATATTCTGATTTAAATTGGTCTGTGCCAGATGTGGAAGCGGGTTCTTGTAACCCCAGTTCTGGGGAGGTAGAGCCTTGGGGTTCCCTGGCCAGCTCACCTAGTCTAGTCATTGGGCTCCAGACCAATGAGAGACCCTATTTCTCAAAAAACAAAAAACAAAAAAACAAAAAAAACCAAGATGTAGGACTGAGGAGGTGTCTCAGCAAGAAATGCTCTTGTTGTGTAAACATTAGGCTGGACTTCAGATCCCCAGAGCCCATGTTAATGTCTGCTGGGCATGGTGGCCTGTGTATAATTCAGATGCTTGGAAGACAGAAGCTCCCCAGAGCAAGCTGGGTGGCTACACCAACTGTATCACTGAGCTCTGAGCAGTGAGAGACCCCGCCTCAGTGAATAAAATGGAGAACCATGGGGGAAGACTTAAACAACTGTCTCAGGCTCCACACACATGTACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGTGGACAGCTCCTGAGCAATGACACCATACCCAAGGTTGCTTTCCAAGTGTGCAACCATGTGTCCACCCACTCACACAAACAGAAGCACACACACACACACCAACACACATAAAGATCAAAATATCCACGTATTTTTAAGAGAAGCATTTTTAGAGAGCCGGGAGACACCCAAGACAGGACCCAGTCACACAGTGCCTCCATAAGCAGTGCTGTAAGTTAACGCTGTGGACGTTTCCCCACTCCCTGCCCTTGATTCAAGGAGAGCGAGCTTTTGCTGAAAGGTGTGTGGCTTTCTATTTTATGCCTTTAATAGTCATGAAAGATTAAAACAAAGCAGCTTAATTACATTTCTCATAATGTCACCAGAGTCTACTAGATTATCTCCCCTGGGGAACAGGATAGAAGGGTCCATGAAATAGTGTGAGCTAGCTATGCATTCAAGAGAGGGCTCAGTTCTAGGTACATGATAGAACTTCAGTTCCCACAAAGATGACAAAGGATATCCTTAGACAGAGGCTCAGATAGGAGGCGAAGACTCACCCTTACACCCCCTCACCCCACCCCCGGGATTAAGGAGGGAGAATGAATCCATTGATTCTCCTTCCTTTAAGATCCTCCTAATCCGTCAGTCTCTGCTGCAGGAGAAAGTGGCCATGGTGTGTGTGGGGTGGGGGTGGGGTGGGGGGTGGGTGAGGGTCCCAAACACTGGCTGCCGGTTCCCTGGTGGCCCAGCCTCACAGCTTCTCCCGTCCCCCCAG
Seq C2 exon
GCATGACGGAGATGGTGCGTAAGGTCACCTTGAGCCGAGCACTGAGGATCATGCAGAACCTGTTTCCAGAGGAGTACAACTTCTACCCTCGCTCCTGGATCCTGCCAGAAGAGTTCCAGCTCTTTGTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885:ENSMUST00000112976:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.6=42.4)
A:
NA
C2:
PF0313310=TTL=PU(20.5=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types