HsaINT0174684 @ hg38
Intron Retention
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase like 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr9:122031784-122039368:-
Coord C1 exon
chr9:122039272-122039368
Coord A exon
chr9:122031857-122039271
Coord C2 exon
chr9:122031784-122031856
Length
7415 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
ACAGCGTCTCTTCTCCCCAGGCA
3' ss Score
9.67
Exon sequences
Seq C1 exon
TTCCCATTTGGCCGGCGCTTGCCTTGTGACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAG
Seq A exon
GTATCTGCTGTTATTGTTGACATTTAAACATGTTTCTAGGGCCAAGTCTCAGATACACTCTTCTACTAAAACATGACAGTTATTTTTGAGATCAGATTTGAGGACTCTTAATTGGGAATTGCTGTGTTCACTAGCCATTAAGGTTTTAAGGATTGGAGACAGGCTTTTAAAGGTTCAAAGGCAGGCTTTCTTGGTCTAATGCCACTGGTGGAAGAACATGGTTTCCACTTTTTGGGTTATGCATATAATATGGGGTTCTAATGAGAGGAATATATTCTGAAAATGAAAAAATAATAGAACATTTCATTCTTGCGGGAAACAAAAGCACCAAAATTCTAGGCATATGTCATAGAAATGGGGTATCAGCTTCCCTTTTCTTTAAGTATTATATTTGGAGGTACCATTTTTAAAACCAAATATACTGGTCTCCATATTAAGTACTACAGGCTGCACACAGCCTCTGCCTTTTACCTAATGACATTATCTCAGCAAGACTTATCCTGCAAGGAGAAATCTTAGTGCTAGAAAAGCATCATAGCCAGCACTAAGATATCCCTCTCACTCCACTACCAACCTCCCAATACAACTTTTTTGTTTTGCATTTTAATCTCTACCACTTTTCTGAGATGGAGTCTCGCTTGGTCACTCATACTGGAGAGCAGCAGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCCTGTACCACCATACCCGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTCACGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGACCCACCTGCCTCAGTCTCCCACAGTGCTGGGATTACAAGCGTGAGCCACTGTACCGGGTCTCTTCATTATTTTTGATGGCTGAATGAAGAGGATATTTAAGATGGTAGGACAGCTTAGGGAGAAGGAGCACTGGATTAAGCTGGGTATGATGCAGTCAAAGGGCCTTCCACTTATTTTTTAAAATGTTAATATATTACACAGACCATATTATAATGCCATAATAAATACTTTCTAAAAAGAACATCACCCTGAATCCCATATCTCATTTAACAAAACAGCAATATGAATATTTCTATATTTCCTCCCAAACCTTAAGCAAGTTTACTCATCCTTTTTGCATGGTTGCAGTCCTAGTGTAGTTGCCTAAATATAGGGTGTTTTCTCTTAGTATTTTATCAATTTTACCTATTTTAAAGGGAGAATCAATTTACTGTTTCCTTGACATTCTATCCCACGTCTTTAAGAAAACGCATTGCAGAAAACACAATAGCCATACGTTATACAGGGGGTGGTAGTTATGCCACATCCACTAGGGGTTTTCACCTAAGCATGCAGTCTTACAAGTTCACTACCATAGGCCACACTTAGCTCAGATTCACTTAGAAGGATACAGGGCAGGAAACACGGCTTGCTGGACAGTCAGTGTCAAGCATTTCTCTTCAGTGGAGTATTTGCAAGAGTTCCAGAGACTAGTCTCTGGCTCCTCAAGTGAAAGCTCAGGTGCAAAAGGACAAGATCCACATTGGTGGATATGAGTCTTTCTTGGCTTAGATGCCCCACAGAATCCAGTATCTTTTAGAACTGCTCCATAGTATGCCTTCTAAGGTCCAAGCAAGGGTCATATTAAGTTACAAGAATCATCGCACTCAGAAAAGCCTAGAGCAATGACTTTCTACTAGATATCTATGCAATTTACCAAATCAGGGATCATTTTAACCATATGCTTTGTGGCCTAGTAATTCAGCTAACATTCTACCTTCATTGTTTTCTAGGGGAACTGAGATAGAAAGTTAACCCAAGGTCAAATTTATCCTTAGAGAAGGAGAAAGGGTTTTGTTACAGAACAAGAATGATTCTTGCAGCCAGAGTTCTTACCCAACAGTTTAATGGGATAGCTATTATTTTTTGTGTCTTGCTGCTCAGAAAAGGATGCTTTGTGATGCCACTTAAAGGACTTATTAGGATATTGGGAGAATACAGTTTGGAAGAGAAAACGCTTTGAATGAGGACAGAGTTCCTAAGACATGAATCATCAAATGAGGCCTCATTTACATTTTCCCCATTTGCTCATGCCTCATCTAGTGTCTCAGAGTAGGAAAGAAGTAGCTATAGATCTACATTTGGAATACAAATTAGAAATATAGAATGAAGTACCCACAAAGGATTAGTTTCATAAAGGTGATAGAATGATATTCATTCCAAAGAAGCAAGTTTGCCCCATCCCATATTCCACATGCCGGTGATTGGAACATAGACTTTTCCACATTATTAACAGAAATTAATTAGTTCTAATGACAAAGCAGACTCTTAAACCTCTAGGCAGAGGAACAGTGCTGCCACACCCTCTACCCTGTGAAAGGTAGTAATCCTCAGCAGAGGGGTAATTCCAGAACAGTCTGGCCTCTGATACCAGTTTGTGTCCAAGCTTATCTTCTGTCTCTCATATATCTCATTATTCTAAAATGCACTTTCTATACATTGTATATTACTTAGGGTAAGTTCTAGTGGATATCCCAGGCAAGTGTAAACGCTTTATTTGCTGGGTCAACTGAGAACGGATATATACAGATGGAAGTGATTAATTTTGTTTGTGTCAGCACATTAGATTTTAGTCACTTTTCTATGGGTAATTTCCTGGTTCAAATTACATTATTATATTTTGGCTGATGAATTAAGACTTTCTATGAAAATAATCTGATTTAGATACGTCTAAAGAAAGTAGATTATTAGATATGTCTACTTTCTTTAGACGTATCTAAATCAGACATGTCAGATTAGACATATCAGATTTAGCTTTAAGAAAGTCCAAAACTGTCCATTCTCAGGTTCTGAGCAGGTCTTTTGCTGAGTTTCAGGGTCTGAGATGTATGGCATCACATGGCAGGTGGTACCTGAGAGCCCACCTGAGGAGGGGGCTTTCTGCTGGAGAGGGAGGGAGCTTCAGTGAGGAACCTGTGGGGACAGCCATCTGTCAAGCATTGGTCTGGGCTCTGGGGCTATAAAGACACAGAGAAAGGCATGTAAAGAGAGAAGAAAAATACAGCCTAGGGGCTTTGCTGGAGGAAGCTGGAATGCTGTGGGGGTCCGGAGCAAGGGCGGGCAACCTAACCCAGATTTGCCCAGGGAGCAGCAGGGTGAGAGCTCCTGGAGAACAGGACTGGCATGGAAACTGAGCCTCCAGGATGGATGGGCCTGATCCCCATGCCAAACAAGGGAGCAGAGTTGGTGCAAAGACAGAATGCCTTCAGCATATTACTCGTTCATCGAAGGGCAAGTGGCCTACCATGGTTAGAGGGCGTCAGGTGAGCAGGGCAGGGGAGGGGTGATGAGTAGGAACCCAACTACAGCATTGTTAGAGCCTGAAGGTCATAGGGAGCCACTGAGGAATTTTTAAGCCAGACAGTGACACGGGTCAGCTTGCATGTTAGCAAGATCAGCCAGAGGGACACATTAGAAATGAGATGGCTCAGAGAAGAAACAGAGATGTAGCTAAGAGTCTGCTGCAGCATCCACCCAAGAGATGAATGAATTAGTGGCAATCAGAATAGAGAGAACAGGATGGATCTGAAAGGATTTATTTGTTGTTTGGTGGTTCTAATATGTTTTTGCCAAGAATTATTGTTATAAATAATATTTTGATTGAATAGTGCTCCAAGTATAGCTCAGTTTTAGTTTGTTTTGTTTTACATTAACTGGGTTAAGTAGGGCTGCATGGGCAAACCTGAGGTTGAACTGTTATGCTGTCAGTTAACTTGAATGGGGTGAGACCCACCAGGCCTTGAGACTCCAGCGTAGCAGACAGAAAAGCCCAGGCCTCAGAAGGAGGGGCAGGAGGTAAGCCCTTGGTGTCAGAAACTCCCACCTGAATTAGGAGGTTTTCCCAATCGATAGGGGAACTGCCCTCATAGGGACATCTAGGGATAGACCTTATTGAGAAACCTAGGTGGGCAGTCAACCTCAAAAGGAGCTGTTAGGTAGCAGGACCCCAGACACTGGGTGAAAGTCACAGACAGGAGGATTCCAGCCCTTGCAGGGTGGGCTTGAGGGGAACAGAGGAGAGGTTGGAGAGAGGAGGGGCATTGGAGAGAACAAAGAAAAGGACGCAGCTCTGCATTGCTAAGGCAGCCACTCAGGCTCCAGGAGCAAAAGATAAGGTCACCAACATTTGGATACAAGCAATAGAACACCGGAAAAATGGGTAAAATCCTTCTTATCTGGTTGGAATACATAGTCTAGGTCAGACTTTTAGCAGAAGGGAGCTGGGGGTTAGACCTAGAGCTTCGATCTCAGTTCAGAATTGGTCCTAGAGCCCAGGGAGGGGACACAGGTGACGAGGGGTCAGGCGCTGCAGCTGCTTAGGGAAAGGGGACAGGGCCTGGAGCCAGTAGGGCCTGAAGTCAGCAGAGCTGGCCATGACCTTCCTTCTCACAGATTTACTCTGGGAACGCGTGCCCTGGATCAGCTAGAAACCCTGCTACGCTTGTCAGGGTCATAATGGAGAAGTTGCCACTCCCACACCTGTCTCTGAGCCACCTCCAGAGGTGGAGATGCCAGGAGCTTCCATGTGGGTTCTAGTGAGGGGCCAGAAACTCTTTCCCTGGTGGCACTGGATAGGAGCACAGCTTAGATATGGAGGAGCAAAGGTTTGGTGCTAAGTGGATTGAGAGAAGTCTACACCCGTCCCTCCTGGAGACAGGCATTCAGGCAGGTTTGGAGTGAGCTGCCTCCGGCCTGCAGGCAGGAAGTGCCTGGCTTCCAGGGGTGCTTCTTAAGTTGGCCATTTTCAGTAGAAAAACTGCCTGGAGACATGAAGGTAAACTTGGAAACACCTATTAGCTGGTGTGGGGCCTGATGGTGCACATTACAGAAGGAGCCATTGCCGATATTAAATGAATATTGACTGAATTTGCTGGACATAGATTTTCACAAAACTTTTCTGGAGCACCCAGACTGCCCTCAAGTACCCACAGCTCTCTGTGTTGTGTGAGCCCTTCTGACCTGCTGAGGGATTTCGGAAGAGAACATTCCCCCGGCACAACGACTTTAAAGTGCAGAAAATACCACAACACTATTTGGTCAGGAGGCATCCTCTACGTGGAGTAAGGTGCTGTATTACAGTTAGTTATGAAGGCTTTCAGTTCAATACGGTAACATTTTAATGTTAGTAAACCTCAAGCAAAAGGATTCCAAAAAAGTTGAAGTTTTGCTTTGTTTACTTTGCGGTCAGCTCTAGTGTTTATTATGCAACAATTCTAATTTCGAGGGAGAATAAAAGGAAATAGCTGTGATTTTCCAGACTCCCTTCTTGGGAAGCTCAGAACAGTGTCCTCAGTGAGTTTTCTTGACTATTGAACAGTCCATGTTAGAGCAGTTTATTAGTGCTTTTTAAGCTCCTTTATTTCTTACTTAATCCTTCCCTACATCCTTCTAAACAACAACTAAGACCTGGGCACTGACGTCTTGAAGCTGGGATCTTTAGATTTATTGCACTTTTTAATACGCTGATGGAAGCAAGAAGTTGGTTCTTAAAACTTTCCTTCCCAGATGTTTACCCTTTTCTTTCTGAACGTGGGAATTTAGAGGAAACTCATTCATTCTGACTGCCCATTTGGAATGTGTGATAATTTGGGCATGCCAAGCTGACATGGAACTTTGTATTTTCTATTAAAAATAGCTTTGCCAAGCACATTTCTAGTATCAGTAATGGAACTGTTTGGTCTCTTTCAGGGTAAAGGCCATTTGTAGCCACCATTTTTGGCAATGATATTTGTCTTAAGAAACAAGCATGATAGCCGGGTGCGGTGGCCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGGGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAATACAAAAATTTGCTGGGCATGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTAGGAGGCGGCGGTTGCAGTAAGCCAAGATCGTGCCATTGCACTCCAGTCTAGGCAACAAGAGCGAAACTCTGCCTAAAAAGAAAAAGAAAAAGAAATAAGGATGATGCCAGGCATGGCGGCTTACACCTGTAATTCCAGGGCTTTGGGAGGCCAAGGCAGGTGGATGGCTTGAGCCTAGAAGTTCGAGACTAGCCTGGGCAATAGTGAGACCCTGTCTCTACAAAAACAAAAACAATACAAAAATTAGCCGGGCATGGTGGCACACACCTGTAGTCCCAGCTACTCGAGAGGCTGAGGTGGGAGGATCCCTTGAGCCTGGGAGGTGGAGGTTGCAATGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCATTAAAGCAAGGCTGTGTTTCAAAAAAAAAAAAAAAGAAAAAATGAAATAAACATGCTAAAATTGATAATAATTTTTACCTATTTGCTTAAAATTTGCTACAATATATAGTACTCAGTTTCTTCTCTTGTCAGAGTTACTAATGATGTTACAAGAAAAAAAATCCACCAACCTTTTTTTTTTTTTTGAGACGGAGTCCTGCTCTGTTGCCCAGACTGGAGTGCAGTGGCTCGATCTTGGCTCATTGCAAGCTCCGCCTCCCAGGTTCACACCCCCACCATTCTTTTAATGTTTTATAACAGTGAGACATTTCAATTCCCTCTGGGCAAATTAATGAGATAGGATCAATGTCAGTGTCAGTCCTTATAACTGAGGAACTCCTACAGATTGCATTTTTCCCTTGAAGTATAAATTTTGGTATTCTTTTTATTTCCTGTCCTTCATTCAAGGAGACAGATTTTATGCTGAAAGATGTGTGTTTTCCTATTCCATGCCTTTAATACTCATGAAACAGTAAAAGAAGTAAACTTAATTAAGCCTCTCATAATGTAACCAGAGTCCACTAGATGATATTCTCTAGGGTACAAGACGGAAGGAATCCCAGAAGCACGTAAGGTGGCCCCAAATTAAAGAAGGTATTAAATTTTAAGTGCAAGATATAAATGCTTCCCTATTCATTACCTAAGGGGGTGACAAAGAATAAAAGAATAAACTAGGTGAAAACTCATTCCTTCAAACTGATGCTTCATTTTTATAAAGAGAAAAGAACACCCGTCCGTTACCTCAAGTTTTTCATTAACTCAGTAGTTCTTTCCAAACCATGAGTCACCGCTGTGGGGAACAACTCAGACCTTTTTTAAAAATCCTGCCTGAAAAAGAGAATATGTCGGGTGGGTGGTTTTAAAAGTCCCAAATAATGGCTGTTTTATAGCTAGTAGCCCACTGTTGTTAAAACCTCACAGCGTCTCTTCTCCCCAG
Seq C2 exon
GCATGACGGAGATGGTGCGTAAAATTACTCTGAGCAGAGCAGTGAGAACCATGCAGAATCTCTTTCCTGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764:ENST00000373778:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.6=42.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains