HsaEX0068062 @ hg38
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase like 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr9:121989195-122039368:-
Coord C1 exon
chr9:122039272-122039368
Coord A exon
chr9:122031723-122031856
Coord C2 exon
chr9:121989195-121989770
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACAGCGTCTCTTCTCCCCAGGCA
3' ss Score
9.67
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
TTCCCATTTGGCCGGCGCTTGCCTTGTGACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAG
Seq A exon
GCATGACGGAGATGGTGCGTAAAATTACTCTGAGCAGAGCAGTGAGAACCATGCAGAATCTCTTTCCTGAGGAGTACAACTTCTACCCTCGCTCATGGATTCTGCCTGACGAGTTCCAGCTCTTTGTTGCTCAG
Seq C2 exon
GTTCAAATGGTGAAAGACGATGACCCCTCCTGGAAGCCCACTTTTATCGTGAAACCTGATGGTGGTTGTCAGGGTGATGGAATCTACCTCATTAAAGACCCCAGTGACATCCGCCTGGCAGGGACCCTCCAGAGCAGGCCAGCGGTGGTCCAGGAGTACATCTGCAAACCTCTCCTTATCGACAAGCTCAAGTTTGATATTCGTCTGTATGTCTTACTCAAGTCCTTAGACCCCTTAGAGATTTATATAGCCAAAGACGGACTCTCTAGGTTTTGTACCGAGCCATATCAGGAGCCCACCCCCAAAAACCTGCACCGCATCTTTATGCACTTAACCAACTATTCACTGAACATCCACAGCGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTAGACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.6=42.4)
A:
PF0313310=TTL=FE(14.3=100)
C2:
PF0313310=TTL=FE(62.2=100)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTGCCTTGTGACATCTA
R:
AGATGTACTCCTGGACCACCG
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development