GgaEX0001588 @ galGal3
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
NA
Coordinates
chr17:9353824-9360956:-
Coord C1 exon
chr17:9360860-9360956
Coord A exon
chr17:9359251-9359384
Coord C2 exon
chr17:9353824-9354399
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGTGGTTTTTCCCAGGCA
3' ss Score
8.02
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
Seq A exon
GCATGACAGAGATGGTTCGTAAGGTCACGCTGAGCCGGGCAGTGAGAACGATGCAGGATCTATTTCCTGTGGAATATAACTTCTATCCTCGCTCCTGGATTCTGCCCGAGGAGTTTCCCCTCTTTGTGACTGAG
Seq C2 exon
GTTCGTATGATGAAAGAGAGTGATCCATCCTGGAAGCCCACTTTTATTGTCAAACCTGATGGCGGGTGCCAGGGGGATGGAATCTACCTCATTAAAGACCCCAATGATGTCAGGCTGGCTGGGAGCCTGCAGAGCCGCCCAGCGGTGGTCCAGGAGTACATCTGCAAACCACTGCTTGTTGACAAGCTGAAATTTGATATTCGTCTTTATGTCCTACTGAAGTCCTTAGAACCTTTAGAGATTTATATAGCCAAAGATGGACTTTCTAGATTTTGTACAGAGCCCTATCAAGAACCCACTCTAAAAAATTTGCACCAGGTTTTTATGCACTTAACTAACTACTCACTAAATATCCATAGTGGGAATTTCATCCATTCTGATAATGCAAACACTGGCAGCAAGAGGACTTTCTCAAGCATTCTGTGCAGACTGTCTTCCAGAGGAGCTGATGTAAAAAAGGTTTGGTCAGATATAATTTCACTGGTGATTAAAACAATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0313310=TTL=PU(54.2=98.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTGGCAGACGCTTGC
R:
AGATGTACTCCTGGACCACCG
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event