MmuEX0049654 @ mm10
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35902570-35979624:-
Coord C1 exon
chr2:35979172-35979624
Coord A exon
chr2:35940674-35940807
Coord C2 exon
chr2:35902570-35903145
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTCCCGTCCCCCCAGGCA
3' ss Score
9.87
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
ATGCGGCGCAGCAGCCCGGAGAAGAAGCCGGAGGCTGAGTGGGAGGCGGACGCGGCGGCGGCGGCGGCGGCGACAGCAGCGGCGACCGAGTCGCTACCGGCGGAGACTGAGAAGCAGCAGGGCGTGGACGCTGGCGCGGCCGGGGATCCAGAGCGCCTGGAGCTGGAGGAGCAGCCCAAGGACGTGGGCCGGATCCCGACCCCGACGCGACGCCACGCGCCCGAGGAAGGAGAGGCCCGCGTCGTCCGGCGGCTGCCACCAGCGCTGCCCCTGGCCCAGCCGAGGCCGGCGGCGCGGGCCCTGAGCCAGCTCGTGAAGGCACGGGGCCGGAGCCGGAGCCGGGTCTACCGGCGGAGCGCAGGCTCGATGCGGCCGGTCACCGTGGACAGCTCCAAGGCCCGCACCTCCCTGGACGCGCTCAAGATCAGTCTTCGCCAGCTCAGGTGGAAGGAG
Seq A exon
GCATGACGGAGATGGTGCGTAAGGTCACCTTGAGCCGAGCACTGAGGATCATGCAGAACCTGTTTCCAGAGGAGTACAACTTCTACCCTCGCTCCTGGATCCTGCCAGAAGAGTTCCAGCTCTTTGTGTCTCAG
Seq C2 exon
GTCCAAACGGTGAAAGAAGGTGACCCCTCCTGGAAGCCCACTTTTATTGTGAAACCGGATAGTGGTTGTCAGGGTGATGGAATCTACCTCATTAAGGATCCCTGTGATGGTCGCCTGACTGGGACCCTCCATAACAGGCCGGCAGTGGTCCAGGAGTACATCCGCAAGCCCCTCCTCATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCTTGCTGAAGTCCTTGGATCCCTTAGAGATTTATATTGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCTAACCCCCAGAATCTGCACCATGTCTTTATGCACCTGACCAACTACTCCCTGAATATCCACAGCGGCAAGTTTGTCCACTCTGACAGCGCCAGCACGGGCAGCAAGAGGACTTTCTCTAGCATTCTTTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0313310=TTL=PU(20.5=97.7)
C2:
PF0313310=TTL=FE(62.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGTCTTCGCCAGCTCAG
R:
TCAGCAAGACATACAGACGGA
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types