RnoEX0002981 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15239133-15285580:-
Coord C1 exon
chr3:15285480-15285580
Coord A exon
chr3:15278508-15278641
Coord C2 exon
chr3:15239133-15239708
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACAGTTTCTCCTCTCCCCAGGCA
3' ss Score
10.53
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
CTAGTTCCCATTTGGCCGGCGCTTGCCTTGTGACATCTACTGGCATGGAGTTTCATTTCGCGACAATGACATACTCTCCGGTCAAGTGAACAAATTTCCAG
Seq A exon
GCATGACGGAGATGGTGCGTAAAATCACCTTGAGCAGAGCTCTGAGGATCATGCAGAACCTGTTTCCCGAGGAGTACAACTTCTACCCTCGCTCGTGGATCCTGCCTGAGGAGTTCCAGCTCTTTGTTGCTCAG
Seq C2 exon
GTCCAAACGGTGAAAGACAATGACCCCACCTGGAGGCCCACTTTTATTGTGAAACCGGACAGTGGTTGTCAGGGCGACGGAATCTACCTCATTAAAGATCCCTGTGACTGCCGCCTGACTGGGACCCTGCATAACAGGCCGGCAGTAGTCCAGGAGTACATCCGCAAGCCTCTCCTTATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCCTGTTGAAGTCCTTGGACCCCTTAGAGATCTATATAGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCCAACCCCCAGAACCTGCACCATGTCTTCATGCACTTGACCAACTACTCCCTGAACATCCACAGCGGCAAGTTCGTCCACTCAGACAGCGCCAGCACAGGCAGCAAGAGGACTTTCTCTAGCATTCTCTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
PF0313310=TTL=PU(14.6=97.7)
C2:
PF0313310=TTL=FE(64.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTGCCTTGTGACATCTA
R:
TGTACTCCTGGACTACTGCCG
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]