DreEX0082094 @ danRer10
Exon Skipping
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33026620-33036776:+
Coord C1 exon
chr5:33026620-33026719
Coord A exon
chr5:33031029-33031162
Coord C2 exon
chr5:33036201-33036776
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTATCCTGTCGGTCAGCAGGAA
3' ss Score
6.16
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTTCCGATGGGTAGGCGGACAGCCTGCGATATCTACTGGCACGGCGTCTCTTTTCATGACAACGAGAACATTGTCTCTGGGCAAGTCAACAAATTCCCAG
Seq A exon
GAATGATAGAGATGCTGAGGAAGATAAATCTGAGTCGAGCTGTGCGCACCATGCAGGAGATTTACCCGGAGGAGTATAACTTCTATCCACGATCCTGGATTCTGCCTGAGGAATACCAGCTCTTCTGCACACAG
Seq C2 exon
ATTCGTCTCCTGAAAGATAACGATTCCATTCTCAAACCCACCTTCATCGTCAAACCGGACAGTGGATCCCAAGGGGATGGCATCTACCTCATCCGCGACCCTGCTGACCTTCGGGTGATCTCAGGTTCTCAGATCAAGCAATCGGTCGTTCAAGAATACATCCAGAAGCCCCTGCTCATCGATAAACTCAAGTTTGACATCCGCCTGTACGTTCTGGTCCGCTCACTGGATCCTCTAGAAATCTATATCGCTAAAGAAGGCTTGTCCAGGTTCTGCACCGAACCCTACCAGGAGCCCAGCCAGAAGAACCTCAGTCATGTTTTTATGCACCTTACCAACTACTCGCTGAATGTGCACAGCGGTAACTTTGTCCACTCTGACAGCTGCAGCACGGGCAGTAAACGCACCTTCTCTAGCGTCCTCTACCGCCTGGCGTCTAAAGGAGTGGACATCAAGAAGGTCTGGTCAGACATCATTGCTCTGGTTATCAAGACTGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.8=44.1)
A:
PF0313310=TTL=FE(14.1=100)
C2:
PF0313310=TTL=FE(61.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAACATTGTCTCTGGGC
R:
ACGTACAGGCGGATGTCAAAC
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]