GgaEX0001588 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8647359-8654491:-
Coord C1 exon
chr17:8654395-8654491
Coord A exon
chr17:8652786-8652919
Coord C2 exon
chr17:8647359-8647934
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGGCTGTGGTTTTTCCCAGGCA
3' ss Score
8.02
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
Seq A exon
GCATGACAGAGATGGTTCGTAAGGTCACGCTGAGCCGGGCAGTGAGAACGATGCAGGATCTATTTCCTGTGGAATATAACTTCTATCCTCGCTCCTGGATTCTGCCCGAGGAGTTTCCCCTCTTTGTGACTGAG
Seq C2 exon
GTTCGTATGATGAAAGAGAGTGATCCATCCTGGAAGCCCACTTTTATTGTCAAACCTGATGGCGGGTGCCAGGGGGATGGAATCTACCTCATTAAAGACCCCAATGATGTCAGGCTGGCTGGGAGCCTGCAGAGCCGCCCAGCGGTGGTCCAGGAGTACATCTGCAAACCACTGCTTGTTGACAAGCTGAAATTTGATATTCGTCTTTATGTCCTACTGAAGTCCTTAGAACCTTTAGAGATTTATATAGCCAAAGATGGACTTTCTAGATTTTGTACAGAGCCCTATCAAGAACCCACTCTAAAAAATTTGCACCAGGTTTTTATGCACTTAACTAACTACTCACTAAATATCCATAGTGGGAATTTCATCCATTCTGATAATGCAAACACTGGCAGCAAGAGGACTTTCTCAAGCATTCTGTGCAGACTGTCTTCCAGAGGAGCTGATGTAAAAAAGGTTTGGTCAGATATAATTTCACTGGTGATTAAAACAATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.7=45.5)
A:
PF0313310=TTL=FE(13.8=100)
C2:
PF0313310=TTL=FE(59.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTGGCAGACGCTTGC
R:
AGATGTACTCCTGGACCACCG
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]