GgaEX0001589 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8646702-8652919:-
Coord C1 exon
chr17:8652786-8652919
Coord A exon
chr17:8647359-8647934
Coord C2 exon
chr17:8646702-8646797
Length
576 bp
Sequences
Splice sites
3' ss Seq
TTTAATTATTTTCCTTCTAGGTT
3' ss Score
10.65
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCATGACAGAGATGGTTCGTAAGGTCACGCTGAGCCGGGCAGTGAGAACGATGCAGGATCTATTTCCTGTGGAATATAACTTCTATCCTCGCTCCTGGATTCTGCCCGAGGAGTTTCCCCTCTTTGTGACTGAG
Seq A exon
GTTCGTATGATGAAAGAGAGTGATCCATCCTGGAAGCCCACTTTTATTGTCAAACCTGATGGCGGGTGCCAGGGGGATGGAATCTACCTCATTAAAGACCCCAATGATGTCAGGCTGGCTGGGAGCCTGCAGAGCCGCCCAGCGGTGGTCCAGGAGTACATCTGCAAACCACTGCTTGTTGACAAGCTGAAATTTGATATTCGTCTTTATGTCCTACTGAAGTCCTTAGAACCTTTAGAGATTTATATAGCCAAAGATGGACTTTCTAGATTTTGTACAGAGCCCTATCAAGAACCCACTCTAAAAAATTTGCACCAGGTTTTTATGCACTTAACTAACTACTCACTAAATATCCATAGTGGGAATTTCATCCATTCTGATAATGCAAACACTGGCAGCAAGAGGACTTTCTCAAGCATTCTGTGCAGACTGTCTTCCAGAGGAGCTGATGTAAAAAAGGTTTGGTCAGATATAATTTCACTGGTGATTAAAACAATTATTGCACTGACACCAGAACTGAAAGTTTACTATCAGTCTGACATCCCAGCAGGAAAGCCTGGGCCAACTTGCTTCCAG
Seq C2 exon
ATTTTAGGGTTTGACATTCTCCTGATGAAAAACTTGAAGCCCATGTTGCTGGAAGTAAATGCAAACCCCAGCATGAGAATAGAGCACGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-2/6=1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(13.8=100)
A:
PF0313310=TTL=FE(59.7=100)
C2:
PF0313310=TTL=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACAGAGATGGTTCGTA
R:
CTCTTGCTCGTGCTCTATTCTCA
Band lengths:
230-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]