MmuEX6100871 @ mm9
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35745792-35796327:-
Coord C1 exon
chr2:35796194-35796327
Coord A exon
chr2:35758090-35758665
Coord C2 exon
chr2:35745792-35745887
Length
576 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCCCTCCCTTCCAGGTC
3' ss Score
13.92
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCATGACGGAGATGGTGCGTAAGGTCACCTTGAGCCGAGCACTGAGGATCATGCAGAACCTGTTTCCAGAGGAGTACAACTTCTACCCTCGCTCCTGGATCCTGCCAGAAGAGTTCCAGCTCTTTGTGTCTCAG
Seq A exon
GTCCAAACGGTGAAAGAAGGTGACCCCTCCTGGAAGCCCACTTTTATTGTGAAACCGGATAGTGGTTGTCAGGGTGATGGAATCTACCTCATTAAGGATCCCTGTGATGGTCGCCTGACTGGGACCCTCCATAACAGGCCGGCAGTGGTCCAGGAGTACATCCGCAAGCCCCTCCTCATCGACAAACTCAAGTTCGACATCCGTCTGTATGTCTTGCTGAAGTCCTTGGATCCCTTAGAGATTTATATTGCCAAAGATGGACTCTCTAGGTTTTGTACAGAGCCATATCAAGAACCTAACCCCCAGAATCTGCACCATGTCTTTATGCACCTGACCAACTACTCCCTGAATATCCACAGCGGCAAGTTTGTCCACTCTGACAGCGCCAGCACGGGCAGCAAGAGGACTTTCTCTAGCATTCTTTGTAGACTGTCTTCCAAAGGTGTGGACATCAAGAAGGTCTGGTCTGATATCATCTCCTTAGTTATTAAGACTGTCATCGCCCTGACCCCAGAGCTCAAAGTTTTCTACCAGTCAGACATCCCAACAGGGAGGCCGGGGCCCACCTGCTTCCAG
Seq C2 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACTTGAAGCCTATGCTACTTGAAGTGAATGCAAACCCCAGCATGCGAATTGAGCATGAATACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885-'4-7,'4-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(14.6=97.7)
A:
PF0313310=TTL=FE(62.2=100)
C2:
PF0313310=TTL=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACGGAGATGGTGC
R:
TTCGTATTCATGCTCAATTCGCA
Band lengths:
230-806
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: