HsaEX0068063 @ hg19
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase-like family, member 11 [Source:HGNC Symbol;Acc:18113]
Coordinates
chr9:124737163-124801647:-
Coord C1 exon
chr9:124801551-124801647
Coord A exon
chr9:124751474-124752049
Coord C2 exon
chr9:124737163-124737258
Length
576 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTTTTCCCCCTCCAGGTT
3' ss Score
11.8
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TTCCCATTTGGCCGGCGCTTGCCTTGTGACATCTACTGGCATGGAGTTTCATTTCACGACAATGACATATTCTCCGGTCAAGTGAACAAGTTTCCAG
Seq A exon
GTTCAAATGGTGAAAGACGATGACCCCTCCTGGAAGCCCACTTTTATCGTGAAACCTGATGGTGGTTGTCAGGGTGATGGAATCTACCTCATTAAAGACCCCAGTGACATCCGCCTGGCAGGGACCCTCCAGAGCAGGCCAGCGGTGGTCCAGGAGTACATCTGCAAACCTCTCCTTATCGACAAGCTCAAGTTTGATATTCGTCTGTATGTCTTACTCAAGTCCTTAGACCCCTTAGAGATTTATATAGCCAAAGACGGACTCTCTAGGTTTTGTACCGAGCCATATCAGGAGCCCACCCCCAAAAACCTGCACCGCATCTTTATGCACTTAACCAACTATTCACTGAACATCCACAGCGGCAACTTCATCCACTCGGACAGTGCTAGCACTGGCAGCAAAAGGACTTTTTCCAGCATCCTTTGTAGACTGTCTTCCAAAGGCGTTGACATCAAGAAGGTCTGGTCTGACATCATCTCCGTGGTGATTAAGACGGTCATCGCGCTGACTCCAGAGCTCAAAGTCTTCTACCAGTCAGACATCCCCACGGGGAGGCCGGGCCCCACGTGCTTCCAG
Seq C2 exon
ATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGTATGAGAATCGAACATGAGCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_MULTIEX1-2/4=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.023
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.6=42.4)
A:
PF0313310=TTL=FE(62.2=100)
C2:
PF0313310=TTL=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTGGCCGGCGCTTG
R:
TTCGTGCTCATGTTCGATTCTCA
Band lengths:
190-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)